SSA315
Library SS
(Link to library)
Clone ID SSA315
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04364-1
Original site URL
Representative seq. ID SSA315Z
(Link to Original site)
Representative DNA sequence
>SSA315 (SSA315Q) /CSM/SS/SSA3-A/SSA315Q.Seq.d/
XXXXXXXXXXTTAAAGCCAACAACCAAGTGGGTTGCGAAATTTGTGAAATGATAACCACA
TTTTTAGAAGATAAATTGGCAAATAGTAATGTTGAAACTAATATTAGTGAAGAATTAATG
AAACTATGTAATTACATTCCATCAAACTATCAAACCATATGTAATAATTTAATTGAAAAT
AATATTGATTCAATTATTAAATCCTTTGAAAATAATGAAACCCCAACAATAATTTGCGAT
CAACTTGGATTATGTTCACAATCTTCATCTTCATCATCAAACTTTGATACCATCCAAGAA
ACTTCTTCATCATCATCATCATCATCATCATCAGATCTCCCATCAGTAGGATGTTTAATT
TGTGAGTTCATTGTCCAAAAGGTTGAGAGTTATATTGAAGTTAATGCAACACAATCTGAA
ATTGAATATTTCTTAGATCAAGATTGTAATAAATTTGGTGGTGGTTATGCTGGTGAATGC
GTAGTTTATGTAAATCAATATGTACCCCAATTGGTAAATTACTTATCATACAATCAAAAA
CCTGAAAAAGCTTGCAGTGAAATTAAAGCTTGTCCATCATCCTCTTTTTAATTTTTATTA
TTATTTCCATTTAAATAAATCCAAAAATAA
sequence update 1997. 7. 5
Translated Amino Acid sequence
---KANNQVGCEICEMITTFLEDKLANSNVETNISEELMKLCNYIPSNYQTICNNLIENN
IDSIIKSFENNETPTIICDQLGLCSQSSSSSSNFDTIQETSSSSSSSSSSDLPSVGCLIC
EFIVQKVESYIEVNATQSEIEYFLDQDCNKFGGGYAGECVVYVNQYVPQLVNYLSYNQKP
EKACSEIKACPSSSF*flllfpfk*iqk*


Translated Amino Acid sequence (All Frames)
Frame A:
---*sqqpsglrnl*ndnhifrr*igk**c*n*y**rinetm*lhsiklsnhm**fn*k*
y*fny*il*k**npnnnlrstwimftififiikl*yhprnffiiiiiiiirspisrmfnl
*vhcpkg*ely*s*cnti*n*iflrsrl**iwwwlcw*mrslcksictpigklliiqskt
*kslq*n*slsiilflifiiisi*inpki


Frame B:
---KANNQVGCEICEMITTFLEDKLANSNVETNISEELMKLCNYIPSNYQTICNNLIENN
IDSIIKSFENNETPTIICDQLGLCSQSSSSSSNFDTIQETSSSSSSSSSSDLPSVGCLIC
EFIVQKVESYIEVNATQSEIEYFLDQDCNKFGGGYAGECVVYVNQYVPQLVNYLSYNQKP
EKACSEIKACPSSSF*flllfpfk*iqk*


Frame C:
---kpttkwvakfvk**phf*kinwqivmlklilvkn**nyvitfhqtikpyvii*lkii
liqllnplkimkpqq*fainldyvhnlhlhhqtlipskkllhhhhhhhhqishq*dv*fv
sslskrlrvilklmqhnlklnis*ikivinlvvvmlvna*fm*inmypnw*ityhtiknl
kklavklklvhhplfnfyyyfhlnkskn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM282 (SSM282Q) /CSM/SS/SSM2-D/SSM282Q.Seq.d/ 589 e-167
SSA315 (SSA315Q) /CSM/SS/SSA3-A/SSA315Q.Seq.d/ 589 e-167
AHO314 (AHO314Q) /CSM/AH/AHO3-A/AHO314Q.Seq.d/ 48 2e-04
SSM702 (SSM702Q) /CSM/SS/SSM7-A/SSM702Q.Seq.d/ 44 0.003
VFO467 (VFO467Q) /CSM/VF/VFO4-C/VFO467Q.Seq.d/ 42 0.010
VFM484 (VFM484Q) /CSM/VF/VFM4-D/VFM484Q.Seq.d/ 42 0.010
VFI615 (VFI615Q) /CSM/VF/VFI6-A/VFI615Q.Seq.d/ 42 0.010
VFG646 (VFG646Q) /CSM/VF/VFG6-B/VFG646Q.Seq.d/ 42 0.010
VFE490 (VFE490Q) /CSM/VF/VFE4-D/VFE490Q.Seq.d/ 42 0.010
SSK119 (SSK119Q) /CSM/SS/SSK1-A/SSK119Q.Seq.d/ 42 0.010

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 42 1e-05 11
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 38 2e-04 8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 3e-04 10
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 36 6e-04 9
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 38 0.002 9
BV066226|BV066226.1 S212P60433FD4.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site. 54 0.002 1
AL928788|AL928788.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP24-294K11 15 unordered pieces. 54 0.006 3
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 44 0.012 8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 36 0.014 9
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 34 0.023 9
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 95 1e-18
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 95 1e-18
AY815893_1(AY815893|pid:none) Schistosoma japonicum SJCHGC01869 ... 84 4e-15
AF196308_1(AF196308|pid:none) Naegleria fowleri naegleriapore A ... 82 2e-14
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 80 4e-14
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 80 5e-14
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 80 5e-14
CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 80 6e-14
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 80 6e-14
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 80 6e-14
protein update 2009. 6. 8
PSORT

psg: 0.85 gvh: 0.28 alm: 0.41 top: 0.20 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSA315 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA315Z
3' end seq.
>SSA315Z.Seq
----------TTAAAGCCAACAACCAAGTGGGTTGCGAAATTTGTGAAATGATAACCACA
TTTTTAGAAGATAAATTGGCAAATAGTAATGTTGAAACTAATATTAGTGAAGAATTAATG
AAACTATGTAATTACATTCCATCAAACTATCAAACCATATGTAATAATTTAATTGAAAAT
AATATTGATTCAATTATTAAATCCTTTGAAAATAATGAAACCCCAACAATAATTTGCGAT
CAACTTGGATTATGTTCACAATCTTCATCTTCATCATCAAACTTTGATACCATCCAAGAA
ACTTCTTCATCATCATCATCATCATCATCATCAGATCTCCCATCAGTAGGATGTTTAATT
TGTGAGTTCATTGTCCAAAAGGTTGAGAGTTATATTGAAGTTAATGCAACACAATCTGAA
ATTGAATATTTCTTAGATCAAGATTGTAATAAATTTGGTGGTGGTTATGCTGGTGAATGC
GTAGTTTATGTAAATCAATATGTACCCCAATTGGTAAATTACTTATCATACAATCAAAAA
CCTGAAAAAGCTTGCAGTGAAATTAAAGCTTGTCCATCATCCTCTTTTTAATTTTTATTA
TTATTTCCATTTAAATAAATCCAAAAATAA
Length of 3' end seq. 620
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -