>SSA306 (SSA306Q) /CSM/SS/SSA3-A/SSA306Q.Seq.d/
XXXXXXXXXXAAATCCAAAAATATGATTTACACACTATTATTTTAAATAGTAAAAGTTTA
AGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAGGGTGATGTAAAAGAACAT
TTTTATGAATTAAAAATTGTAAAAGAAGCTCACAATATGGCATTTAAAAAATGTACCGTT
GAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGTAATATTTTTACAACCTCA
TTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTATTGACAATTGCATTGAA
AAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATCTTCATTACTCACAATT
GATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAATGGTTTGTCAAACTAC
ATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGATCACATTTTTGGTAAA
ATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTATATGTTTATGAAACGT
ATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCAAAA
AAAAAAAAAAACAAATTATCTA

---IQKYDLHTIILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFKKCTVE
EGLQLRDLFNGEGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTID
VNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRI
SELLDN*nqqdvpnsnhskkkknkls

Frame A:
---npki*fthyyfk**kfkkasyqrrrcyssqg*ckrtfl*iknckrssqygi*kmyr*
rrftikrfvqwrg*yfynlisyq*g*k*tfstly*qlh*kgc*crstfgv*wcifithn*
cqw*ri*nqqkkikwfvklhqkcllnwrfa*tsrshfw*npsk*nfsknfeeilyvyety
**it*qlkstrcsklksfkkkkkqii


Frame B:
---IQKYDLHTIILNSKSLRKHHIKEEDVIHLKGDVKEHFYELKIVKEAHNMAFKKCTVE
EGLQLRDLFNGEGNIFTTSFHINEDKSELSQLFIDNCIEKGVSAVPHLVYNGASSLLTID
VNGEEYEISRKRLNGLSNYIKSVYSTGDLLEPQDHIFGKIHPSRTFQRTLKKYYMFMKRI
SELLDN*nqqdvpnsnhskkkknkls


Frame C:
---sknmiytllf*ivkv*esiiskkkmlfisrvm*knifmn*kl*kkltiwhlknvplk
kvyn*eicsmerviflqphfismrikvnflnslltialkrvlvpfhiwcimvhlhysqlm
smvknmksaekd*mvcqttskvftqleiclnlkitflvksiqvelfkel*rnticl*nvl
vnylttkinkmfqtqiiqkkkktnyl

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA306 (SSA306Q) /CSM/SS/SSA3-A/SSA306Q.Seq.d/                       1162   0.0
SSM290 (SSM290Q) /CSM/SS/SSM2-D/SSM290Q.Seq.d/                       1152   0.0
SSK841 (SSK841Q) /CSM/SS/SSK8-B/SSK841Q.Seq.d/                       1152   0.0
SSK556 (SSK556Q) /CSM/SS/SSK5-C/SSK556Q.Seq.d/                       1152   0.0
SSH888 (SSH888Q) /CSM/SS/SSH8-D/SSH888Q.Seq.d/                       1152   0.0
SSG806 (SSG806Q) /CSM/SS/SSG8-A/SSG806Q.Seq.d/                       1152   0.0
SSG616 (SSG616Q) /CSM/SS/SSG6-A/SSG616Q.Seq.d/                       1152   0.0
SSF809 (SSF809Q) /CSM/SS/SSF8-A/SSF809Q.Seq.d/                       1152   0.0
SSF627 (SSF627Q) /CSM/SS/SSF6-B/SSF627Q.Seq.d/                       1152   0.0
SSD303 (SSD303Q) /CSM/SS/SSD3-A/SSD303Q.Seq.d/                       1144   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1152  0.0  1
AC133847|AC133847.3 Rattus norvegicus clone CH230-7I2, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  0.050  5
AC120676|AC120676.4 Rattus norvegicus clone CH230-38D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36  0.077  5
CC255893|CC255893.1 CH261-54N21_RM1.1 CH261 Gallus gallus genomic clone CH261-54N21, DNA sequence.    36  0.16  2
CC272838|CC272838.1 CH261-91K7_RM1.1 CH261 Gallus gallus genomic clone CH261-91K7, DNA sequence.    36  0.17  2
AC141349|AC141349.2 Rattus norvegicus clone CH230-358L15, WORKING DRAFT SEQUENCE, 20 unordered pieces.    48  0.30  2
Z79752|Z79752.2 Caenorhabditis elegans cosmid D2005.              38  0.30  3
AL772420|AL772420.5 Oryza sativa chromosome 12, ***SEQUENCING IN PROGRESS***. BAC  OJ1410_G05 of library Monsanto from chromosome 12 of cultivar  Nipponbare of ssp. japonica of Oryza sativa (rice).    40  0.46  3
AC141958|AC141958.1 Rattus norvegicus clone CH230-499N6, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces.    48  0.50  3
AC135861|AC135861.1 Mus musculus chromosome UNK clone RP23-179J18, WORKING DRAFT SEQUENCE, 63 unordered pieces.    34  0.71  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I43) RecName: Full=Uncharacterized protein DDB_G0275161;  &A...   369   e-101
AE017332_42(AE017332|pid:none) Mycoplasma hyopneumoniae 232, com...    36   0.99
AE017244_42(AE017244|pid:none) Mycoplasma hyopneumoniae 7448, co...    36   0.99
CP000713_1273(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl...    35   1.3
CP000498_625(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    35   2.2
AE014187_709(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   2.9
AY820142_1(AY820142|pid:none) Brassica rapa disease resistance-l...    34   3.7
AL670542_12(AL670542|pid:none) Neurospora crassa DNA linkage gro...    34   3.7
AL844509_382(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.4
CP000235_559(CP000235|pid:none) Anaplasma phagocytophilum HZ, co...    33   6.4

 psg: 0.81  gvh: 0.21  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SSA306 is cyt

>SSA306Z.Seq
----------AAATCCAAAAATATGATTTACACACTATTATTTTAAATAGTAAAAGTTTA
AGAAAGCATCATATCAAAGAAGAAGATGTTATTCATCTCAAGGGTGATGTAAAAGAACAT
TTTTATGAATTAAAAATTGTAAAAGAAGCTCACAATATGGCATTTAAAAAATGTACCGTT
GAAGAAGGTTTACAATTAAGAGATTTGTTCAATGGAGAGGGTAATATTTTTACAACCTCA
TTTCATATCAATGAGGATAAAAGTGAACTTTCTCAACTCTTTATTGACAATTGCATTGAA
AAGGGTGTTAGTGCCGTTCCACATTTGGTGTATAATGGTGCATCTTCATTACTCACAATT
GATGTCAATGGTGAAGAATATGAAATCAGCAGAAAAAGATTAAATGGTTTGTCAAACTAC
ATCAAAAGTGTTTACTCAACTGGAGATTTGCTTGAACCTCAAGATCACATTTTTGGTAAA
ATCCATCCAAGTAGAACTTTTCAAAGAACTTTGAAGAAATACTATATGTTTATGAAACGT
ATTAGTGAATTACTTGACAACTAAAATCAACAAGATGTTCCAAACTCAAATCATTCAAAA
AAAAAAAAAAACAAATTATCTA