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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA286
Library SS
(Link to library)
Clone ID SSA286
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSA286Z
(Link to Original site)
Representative DNA sequence 
>SSA286 (SSA286Q) /CSM/SS/SSA2-D/SSA286Q.Seq.d/
XXXXXXXXXXTAGCTCACAACTTTCATACTTTTTAAAAGAAAATTGCATTACAACATACC
ATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAAATGAAGAACTCAAATCAGATA
AATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATGATTATT
TTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCACAACAAAAGATGTCCCAATTC
TCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCATCGAAG
CTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAAATACAA
ATCATTCAAAAGAATGGGGTTTTATTTCTCAAGCTAAAAAACTATTTACTTTCAACCCAT
TAAACACATCAACGCCATCAAAAAAATATCAATATTATTGATTGCAGAAAAATTTAATAA
ACCTATTATTTTATATTTTAACTAA
sequence update 1997. 6. 6
Translated Amino Acid sequence 
---SSQLSYFLKENCITTYHDTVIEYLKICIENEELKSDKSGKKSMEDNLKFFQDQHDYF
QKNLSNQQIQKITTKDVPILIEKLKNLKENGKTLRECIEANVNEQLKTGFNPIVVTKNTN
HSKEWGFISQAKKLFTFNPLNTSTPSKKYQYY*lqknlinllfyilt
Translated Amino Acid sequence (All Frames) 
Frame A:
---SSQLSYFLKENCITTYHDTVIEYLKICIENEELKSDKSGKKSMEDNLKFFQDQHDYF
QKNLSNQQIQKITTKDVPILIEKLKNLKENGKTLRECIEANVNEQLKTGFNPIVVTKNTN
HSKEWGFISQAKKLFTFNPLNTSTPSKKYQYY*lqknlinllfyilt


Frame B:
---ahnfhtf*kkialqhtmiqslni*kfvlkmknsnqinqvknqwkii*sfskinmiif
kkifptnkskksqqkmsqfslkn*ktskkmvkhlenasklm*mnn*kqasiqllsqkiqi
iqkngvlflklknyllsth*thqrhqkniniidcrki**tyyfif*l


Frame C:
---lttfilfkrklhynip*ysh*ifenly*k*rtqir*ir*kingr*fkvfprst*lfs
kksfqptnpknhnkrcpnsh*kikkpqrkw*nt*rmhrs*ck*tiknrlqsncchkkyks
fkrmgfyfss*ktiyfqpikhinaikkisilliaekfnkpiilyfn*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK403 (SSK403Q) /CSM/SS/SSK4-A/SSK403Q.Seq.d/                        424   e-118
SSH227 (SSH227Q) /CSM/SS/SSH2-B/SSH227Q.Seq.d/                        424   e-118
SSA286 (SSA286Q) /CSM/SS/SSA2-D/SSA286Q.Seq.d/                        424   e-118
SHL864 (SHL864Q) /CSM/SH/SHL8-C/SHL864Q.Seq.d/                        424   e-118
SHL712 (SHL712Q) /CSM/SH/SHL7-A/SHL712Q.Seq.d/                        424   e-118
SHL509 (SHL509Q) /CSM/SH/SHL5-A/SHL509Q.Seq.d/                        424   e-118
SHL416 (SHL416Q) /CSM/SH/SHL4-A/SHL416Q.Seq.d/                        424   e-118
SHL413 (SHL413Q) /CSM/SH/SHL4-A/SHL413Q.Seq.d/                        424   e-118
SHL381 (SHL381Q) /CSM/SH/SHL3-D/SHL381Q.Seq.d/                        424   e-118
SHL380 (SHL380Q) /CSM/SH/SHL3-D/SHL380Q.Seq.d/                        424   e-118
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX458482|AX458482.1 Sequence 28 from Patent WO0246454.            34  0.009  7
AX767501|AX767501.1 Sequence 149 from Patent WO03044226.          32  0.018  4
AX767425|AX767425.1 Sequence 73 from Patent WO03044226.           32  0.018  4
AX659038|AX659038.1 Sequence 9 from Patent WO02103041.            32  0.018  4
AX657764|AX657764.1 Sequence 9 from Patent WO02103042.            32  0.018  4
AX599043|AX599043.1 Sequence 383 from Patent WO02077272.          32  0.018  4
AX598929|AX598929.1 Sequence 269 from Patent WO02077272.          32  0.018  4
AX598897|AX598897.1 Sequence 237 from Patent WO02077272.          32  0.018  4
AX598783|AX598783.1 Sequence 123 from Patent WO02077272.          32  0.018  4
AX349089|AX349089.1 Sequence 15 from Patent WO0202808.            32  0.018  4
dna update 2003. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC114263_3(AC114263|pid:none) Dictyostelium discoideum chromosom...    43   0.004
AY346390_1(AY346390|pid:none) Streptococcus pyogenes strain JS12...    43   0.005
AY394532_1(AY394532|pid:none) Streptococcus pyogenes strain NS22...    43   0.005
AY394538_1(AY394538|pid:none) Streptococcus pyogenes strain NS24...    40   0.023
U29585_1(U29585|pid:none) Streptococcus pyogenes emm18.1 gene, c...    40   0.030
(Q5UQU9) RecName: Full=Uncharacterized protein L356;  &AY653733_...    40   0.040
AE009949_1710(AE009949|pid:none) Streptococcus pyogenes MGAS8232...    39   0.068
S06286(S06286)major merozoite surface antigen precursor - malari...    39   0.089
(P19598) RecName: Full=Merozoite surface protein 1; AltName: Ful...    39   0.089
CP000716_1669(CP000716|pid:none) Thermosipho melanesiensis BI429...    38   0.12
protein update 2009. 6. 8
PSORT 

 psg: 0.65  gvh: 0.24  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSA286 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA286Z
3' end seq. 
>SSA286Z.Seq
----------TAGCTCACAACTTTCATACTTTTTAAAAGAAAATTGCATTACAACATACC
ATGATACAGTCATTGAATATTTGAAAATTTGTATTGAAAATGAAGAACTCAAATCAGATA
AATCAGGTAAAAAATCAATGGAAGATAATTTAAAGTTTTTCCAAGATCAACATGATTATT
TTCAAAAAAATCTTTCCAACCAACAAATCCAAAAAATCACAACAAAAGATGTCCCAATTC
TCATTGAAAAATTAAAAAACCTCAAAGAAAATGGTAAAACACTTAGAGAATGCATCGAAG
CTAATGTAAATGAACAATTAAAAACAGGCTTCAATCCAATTGTTGTCACAAAAAATACAA
ATCATTCAAAAGAATGGGGTTTTATTTCTCAAGCTAAAAAACTATTTACTTTCAACCCAT
TAAACACATCAACGCCATCAAAAAAATATCAATATTATTGATTGCAGAAAAATTTAATAA
ACCTATTATTTTATATTTTAACTAA
Length of 3' end seq. 495
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -