>SSA280 (SSA280Q) /CSM/SS/SSA2-D/SSA280Q.Seq.d/
XXXXXXXXXXGATGTTTCGCCCCATTGCGTGGGTTCCGGTGCCTATCATCGTTTGTGGTC
ACTATGGTTGTGGTGGTGTTGCAGCATCTTTTGCCACTCCGGGGTTGGGTCTTTTCCTTT
ATTGGTTCTCCTTTTTGGGGATCTCCCTTTCAAACCTGCCGAATTTATCGAGTGCCTAAT
TCAATTGGAAACCGTTTTTTTTCTCCCCTTTGTGAATTAAATGTCGCCGCCCCTTGTACC
CTTTTGGGTAACCCCCCCCTTTTGCATTCTGCTTGGGAAAAGGGGCCAATTGTTAAAACC
CCTGGTTGGGTCTTTGGTTCCCCGGGTGGTTTTCCCCGGGTTTTGGGGGTTTCCGCTTCC
TTTCGGGGACCTTTGGGATTTATTTTTAAAAATGCTTTTTTTTTTTTTAGGGCTTTTTTT
TCTTTGGGTGTTTGTTTTTTAAAATTTTTTTTTTTCTTGTTTTTTTTTTTTAAAAATTTT
TAAAAAAAAAAGAATTTTTGTAAAAAATATTTCCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---CFAPLRGFRCLSSFVVTMVVVVLQHLLPLRGWVFSFIGSPFWGSPFQTCRIYRVPNS
IGNRFFSPLCELNVAAPCTLLGNPPLLHSAWEKGPIVKTPGWVFGSPGGFPRVLGVSASF
RGPLGFIFKNAFFFFRAFFSLGVCFLKFFFFLFFFFKNF*kkknfckkyfpkkkkkkkkk
kkkkkkkkkkkkkkkk

Frame A:
---mfrpiawvpvpiivcghygcggvaasfatpglglflywfsflgislsnlpnlssa*f
nwkpfffspl*ikcrrplypfg*pppfafclgkganc*npwlglwfpgwfspgfggfrfl
sgtfgiyf*kcffff*gffffgclffkiffflvfff*kflkkkefl*kifpkkkkkkkkk
kkkkkkkkkkkkkkkk


Frame B:
---CFAPLRGFRCLSSFVVTMVVVVLQHLLPLRGWVFSFIGSPFWGSPFQTCRIYRVPNS
IGNRFFSPLCELNVAAPCTLLGNPPLLHSAWEKGPIVKTPGWVFGSPGGFPRVLGVSASF
RGPLGFIFKNAFFFFRAFFSLGVCFLKFFFFLFFFFKNF*kkknfckkyfpkkkkkkkkk
kkkkkkkkkkkkkkkk


Frame C:
---vsphcvgsgayhrlwslwlwwccsifchsgvgsfpllvllfgdlpfkpaefiecliq
letvfflpfvn*mspplvpfwvtppfcillgkrgqllkplvgslvprvvfpgfwgfplpf
gdlwdlflkmlffflglfflwvfvf*nfffscffflkifkkkrifvknisqkkkkkkkkk
kkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA280 (SSA280Q) /CSM/SS/SSA2-D/SSA280Q.Seq.d/                        668   0.0
SSC386 (SSC386Q) /CSM/SS/SSC3-D/SSC386Q.Seq.d/                        123   3e-27
SSE753 (SSE753Q) /CSM/SS/SSE7-C/SSE753Q.Seq.d/                        113   3e-24
SSG314 (SSG314Q) /CSM/SS/SSG3-A/SSG314Q.Seq.d/                        103   3e-21
SSK601 (SSK601Q) /CSM/SS/SSK6-A/SSK601Q.Seq.d/                        100   5e-20
VFL476 (VFL476Q) /CSM/VF/VFL4-D/VFL476Q.Seq.d/                         94   3e-18
VSJ253 (VSJ253Q) /CSM/VS/VSJ2-C/VSJ253Q.Seq.d/                         42   0.009
SSB278 (SSB278Q) /CSM/SS/SSB2-D/SSB278Q.Seq.d/                         42   0.009
VSD361 (VSD361Q) /CSM/VS/VSD3-C/VSD361Q.Seq.d/                         36   0.58
SHL361 (SHL361Q) /CSM/SH/SHL3-C/SHL361Q.Seq.d/                         36   0.58

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U66368|U66368.1 Dictyostelium discoideum carbonic anhydrase (canA) mRNA, complete cds.   100  2e-22  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    50  0.20  4
BU564811|BU564811.1 AGENCOURT_10402822 NIH_MGC_141 Homo sapiens cDNA clone IMAGE:6602972 5', mRNA sequence.    34  1.7  2
AL021396|AL021396.8 Human DNA sequence from clone RP5-971N18 on chromosome 20p12  Contains a processed pseudogene PHKBP1, a novel gene with two  isoforms, ESTs, STSs, GSSs and a CpG island.    44  1.9  1
CB311930|CB311930.1 AGENCOURT_11855756 NICHD_Rh_Ov1 Macaca mulatta cDNA clone IMAGE:6893060 5', mRNA sequence.    44  1.9  1
AC119496|AC119496.5 Rattus norvegicus clone CH230-521O23, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  7.5  1
AC132711|AC132711.3 Rattus norvegicus clone CH230-312M1, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  7.5  1
AC069264|AC069264.5 Homo sapiens chromosome 3 clone RP11-32F23, WORKING DRAFT SEQUENCE, 20 unordered pieces.    42  7.5  1
AC097962|AC097962.6 Rattus norvegicus clone CH230-115I7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  7.5  1
AC120618|AC120618.4 Rattus norvegicus clone CH230-39P15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    42  7.5  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66368_1(U66368|pid:none) Dictyostelium discoideum carbonic anhy...    67   3e-18
CR378673_116(CR378673|pid:none) Photobacterium profundum SS9; se...    54   2e-13
CP000653_671(CP000653|pid:none) Enterobacter sp. 638, complete g...    45   3e-10
(P61517) RecName: Full=Carbonic anhydrase 2;          EC=4.2.1.1...    44   4e-10
CP000036_112(CP000036|pid:none) Shigella boydii Sb227, complete ...    44   4e-10
CU928164_127(CU928164|pid:none) Escherichia coli IAI39 chromosom...    44   4e-10
CP000034_34(CP000034|pid:none) Shigella dysenteriae Sd197, compl...    44   4e-10
AE014075_149(AE014075|pid:none) Escherichia coli CFT073, complet...    44   4e-10
AE005174_130(AE005174|pid:none) Escherichia coli O157:H7 EDL933,...    44   4e-10
CP000822_3146(CP000822|pid:none) Citrobacter koseri ATCC BAA-895...    44   5e-10

 psg: 0.98  gvh: 0.69  alm: 0.25  top: 0.43  tms: 0.07  mit: 0.53  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for SSA280 is pla

>SSA280Z.Seq
----------GATGTTTCGCCCCATTGCGTGGGTTCCGGTGCCTATCATCGTTTGTGGTC
ACTATGGTTGTGGTGGTGTTGCAGCATCTTTTGCCACTCCGGGGTTGGGTCTTTTCCTTT
ATTGGTTCTCCTTTTTGGGGATCTCCCTTTCAAACCTGCCGAATTTATCGAGTGCCTAAT
TCAATTGGAAACCGTTTTTTTTCTCCCCTTTGTGAATTAAATGTCGCCGCCCCTTGTACC
CTTTTGGGTAACCCCCCCCTTTTGCATTCTGCTTGGGAAAAGGGGCCAATTGTTAAAACC
CCTGGTTGGGTCTTTGGTTCCCCGGGTGGTTTTCCCCGGGTTTTGGGGGTTTCCGCTTCC
TTTCGGGGACCTTTGGGATTTATTTTTAAAAATGCTTTTTTTTTTTTTAGGGCTTTTTTT
TCTTTGGGTGTTTGTTTTTTAAAATTTTTTTTTTTCTTGTTTTTTTTTTTTAAAAATTTT
TAAAAAAAAAAGAATTTTTGTAAAAAATATTTCCCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA