SSA276
Library SS
(Link to library)
Clone ID SSA276
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16482-1
Original site URL
Representative seq. ID SSA276E
(Link to Original site)
Representative DNA sequence
>SSA276 (SSA276Q) /CSM/SS/SSA2-D/SSA276Q.Seq.d/
AAAGATTGTTAAGATGAAGAAATCCACTGGTGAAATCCTCAACGTCACTGAAATCTTTGA
AGATAAACCACAAAAAGTTAAGAACTTTGGTGTATTCATCAGATACAACTCTAGATCTGG
TACCCACAACATCTACAAGGAATACAGAGATCTCACTCGTTGTGGTGCTGTTTCTCAAAT
GTACGACGAAATGGCCTCACGTCACTCTGCTCGTGAATCATCCATCCATATCATTGATAT
CAAGGAAATCGCCGCCTCATTAACCAGACGTGCCAACACTAAACAATTCCACGATTCAAA
GATTAAATTCCCATTAACTCACAGAATTGCTAAATCAAAATCAACCTTTGTTGCCAACAG
ACCAAATACCTTCTTCTGTTAAATTTAGATTTTAGGTGCCATATATACTAAATAAAAGGG
ATAGTTATTTAAA
sequence update 1997. 6. 5
Translated Amino Acid sequence
KIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQM
YDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIAKSKSTFVANR
PNTFFC*i*ilgaiytk*kg*lfk


Translated Amino Acid sequence (All Frames)
Frame A:
kdc*deeihw*npqrh*nl*r*ttks*elwcihqiql*iwypqhlqgiqrshslwccfsn
vrrngltslcs*iihpyh*yqgnrrlinqtcqh*tiprfkd*ipinsqnc*ikinlccqq
tkyllllnldfrchiy*ikgivi*


Frame B:
KIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQM
YDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIAKSKSTFVANR
PNTFFC*i*ilgaiytk*kg*lfk


Frame C:
rllr*rnplvksstslkslkinhkklrtlvyssdttldlvpttstrnteislvvvlflkc
ttkwphvtllvnhpsislisrkspph*pdvptlnnstiqrlnsh*ltellnqnqpllptd
qipssvkfrf*vpyilnkrdsyl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE821 (VSE821Q) /CSM/VS/VSE8-A/VSE821Q.Seq.d/ 858 0.0
VSE817 (VSE817Q) /CSM/VS/VSE8-A/VSE817Q.Seq.d/ 858 0.0
VSE711 (VSE711Q) /CSM/VS/VSE7-A/VSE711Q.Seq.d/ 858 0.0
VSC496 (VSC496Q) /CSM/VS/VSC4-D/VSC496Q.Seq.d/ 858 0.0
VSB846 (VSB846Q) /CSM/VS/VSB8-B/VSB846Q.Seq.d/ 858 0.0
VSB745 (VSB745Q) /CSM/VS/VSB7-B/VSB745Q.Seq.d/ 858 0.0
VSB659 (VSB659Q) /CSM/VS/VSB6-C/VSB659Q.Seq.d/ 858 0.0
VSB217 (VSB217Q) /CSM/VS/VSB2-A/VSB217Q.Seq.d/ 858 0.0
VSB154 (VSB154Q) /CSM/VS/VSB1-C/VSB154Q.Seq.d/ 858 0.0
VSA748 (VSA748Q) /CSM/VS/VSA7-B/VSA748Q.Seq.d/ 858 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL397231|AL397231.1 T3 end of clone AS0AA001E06 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus. 68 9e-08 1
AL427914|AL427914.1 clone BA0AB022E06 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 62 5e-07 2
BI451008|BI451008.1 kt80e10.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
BI451005|BI451005.1 kt80e05.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
BI502217|BI502217.1 kt86g11.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:O44480 O44480 E04A4.8 PROTEIN ;, mRNA sequence. 56 4e-04 1
BI450995|BI450995.1 kt80d02.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
BI450863|BI450863.1 kt78f04.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
BG301880|BG301880.1 kt06f01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
BG301484|BG301484.1 kt01g02.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence. 56 4e-04 1
CB097481|CB097481.1 ku41c07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:O44480 O44480 E04A4.8 PROTEIN ;, mRNA sequence. 56 4e-04 1
dna update 2003. 7.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54MK8) RecName: Full=60S ribosomal protein L18a; 254 7e-67
(Q02543) RecName: Full=60S ribosomal protein L18a; &(Q3T003) Re... 153 2e-36
AK222647_1(AK222647|pid:none) Homo sapiens mRNA for ribosomal pr... 153 2e-36
(P62717) RecName: Full=60S ribosomal protein L18a; &(P62718) Re... 152 5e-36
AK168258_1(AK168258|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 152 5e-36
AJ009692_1(AJ009692|pid:none) Podocoryne carnea ribosomal protei... 150 2e-35
EU124968_1(EU124968|pid:none) Arenicola marina ribosomal protein... 147 1e-34
(Q7ZWJ4) RecName: Full=60S ribosomal protein L18a; &AL928834_1(... 145 4e-34
BT043673_1(BT043673|pid:none) Salmo salar clone HM5_1670 ribosom... 145 6e-34
BT049913_1(BT049913|pid:none) Salmo salar clone ssal-evd-507-105... 145 6e-34
protein update 2009. 7. 5
PSORT

psg: 0.79 gvh: 0.32 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSA276 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA276E
Full length Seq.
>SSA276E.Seq
AAAGATTGTTAAGATGAAGAAATCCACTGGTGAAATCCTCAACGTCACTGAAATCTTTGA
AGATAAACCACAAAAAGTTAAGAACTTTGGTGTATTCATCAGATACAACTCTAGATCTGG
TACCCACAACATCTACAAGGAATACAGAGATCTCACTCGTTGTGGTGCTGTTTCTCAAAT
GTACGACGAAATGGCCTCACGTCACTCTGCTCGTGAATCATCCATCCATATCATTGATAT
CAAGGAAATCGCCGCCTCATTAACCAGACGTGCCAACACTAAACAATTCCACGATTCAAA
GATTAAATTCCCATTAACTCACAGAATTGCTAAATCAAAATCAACCTTTGTTGCCAACAG
ACCAAATACCTTCTTCTGTTAAATTTAGATTTTAGGTGCCATATATACTAAATAAAAGGG
ATAGTTATTTAAA
Length of full length seq. 433