>SSA273 (SSA273Q) /CSM/SS/SSA2-D/SSA273Q.Seq.d/
TTTATATATCGAACTTATTCACCACTAAATTTCACCCTCAATAATAAATAATATTATATA
GAATAATTATAATATAGAAATTTTTTTTTTTTTTTTTTTTTTATAAAAAGAAATTAGATA
ACAGAAAAAAAAAGTGGAAAGAAAGTAAAAAAAAAAATAXXXXXXXXXX

yisnlfttkfhpq**iilyriiii*KFFFFFFFYKKKLDNRKKKWKESKKKN---

Frame A:
fiyrtysplnftlnnk*yyie*l*yrnfffffffikrn*itekksgkkvkkk---


Frame B:
lyielihh*ispsiinnii*nnynieiffffffl*keir*qkkkverk*kkk---


Frame C:
yisnlfttkfhpq**iilyriiii*KFFFFFFFYKKKLDNRKKKWKESKKKN---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA273 (SSA273Q) /CSM/SS/SSA2-D/SSA273Q.Seq.d/                        159   2e-38
VSF765 (VSF765Q) /CSM/VS/VSF7-C/VSF765Q.Seq.d/                         40   0.010
VSD802 (VSD802Q) /CSM/VS/VSD8-A/VSD802Q.Seq.d/                         40   0.010
VSD765 (VSD765Q) /CSM/VS/VSD7-C/VSD765Q.Seq.d/                         40   0.010
VSA477 (VSA477Q) /CSM/VS/VSA4-D/VSA477Q.Seq.d/                         40   0.010
SSM291 (SSM291Q) /CSM/SS/SSM2-D/SSM291Q.Seq.d/                         40   0.010
SSM211 (SSM211Q) /CSM/SS/SSM2-A/SSM211Q.Seq.d/                         40   0.010
SSH789 (SSH789Q) /CSM/SS/SSH7-D/SSH789Q.Seq.d/                         40   0.010
SSF750 (SSF750Q) /CSM/SS/SSF7-C/SSF750Q.Seq.d/                         40   0.010
CHH452 (CHH452Q) /CSM/CH/CHH4-C/CHH452Q.Seq.d/                         40   0.010

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U68246|U68246.1 Dictyostelium discoideum WacA (wacA) gene, complete cds.    84  2e-30  3
AX186715|AX186715.1 Sequence 2410 from Patent WO0142467.          32  0.042  3
J01466|J01466.1 Yeast (S.cerevisiae) mitochondrial ATPase subunit gene, 3' spacer.    40  0.046  2
AY219754|AY219754.1 Paradoxaphis plagianthi cytochrome c oxidase subunit I gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome c oxidase subunit II gene, complete cds; mitochondrial genes for mitochondrial products.    42  0.12  2
BX248328|BX248328.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-202H10.    46  0.12  1
U41129|U41129.1 Sitobion cf. fragariae cytochrome oxidase subunit II gene, mitochondrial gene transposed to nucleus, partial sequence.    42  0.13  2
U41128|U41128.1 Sitobion cf. fragariae cytochrome oxidase subunit II gene, mitochondrial gene transposed to nucleus, partial sequence.    42  0.13  2
U41120|U41120.1 Sitobion fragariae cytochrome oxidase subunit II gene, mitochondrial gene encoding mitochondrial protein, partial cds.    42  0.13  2
U41124|U41124.1 Sitobion cf. fragariae cytochrome oxidase subunit II gene, mitochondrial gene encoding mitochondrial protein, partial cds.    42  0.13  2
BX156212|BX156212.1 Danio rerio genomic clone DKEY-123A15, genomic survey sequence.    36  0.13  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 63,601,259

 psg: 0.15  gvh: 0.11  alm: 0.68  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.53  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSA273 is nuc

>SSA273F.Seq
TTTATATATCGAACTTATTCACCACTAAATTTCACCCTCAATAATAAATAATATTATATA
GAATAATTATAATATAGAAATTTTTTTTTTTTTTTTTTTTTTATAAAAAGAAATTAGATA
ACAGAAAAAAAAAGTGGAAAGAAAGTAAAAAAAAAAATA----------