SSA269
Library SS
(Link to library)
Clone ID SSA269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16244-1
Original site URL
Representative seq. ID SSA269Z
(Link to Original site)
Representative DNA sequence
>SSA269 (SSA269Q) /CSM/SS/SSA2-C/SSA269Q.Seq.d/
XXXXXXXXXXTTTTAATCTTTTACAGTACTTTTAGTGATGAAATTGCAAGTGAAAAAAAT
TCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTATCTCTAGTGTCTAT
TCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACATTATCTCAATTCTA
GGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCTAACCAAGAA
CCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAATCTGATGGT
GAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACACCACTAGTC
AATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTT
TTAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAAAATGTTTTCAAATA
TATTTGAAAATATTAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 6. 5
Translated Amino Acid sequence
---LIFYSTFSDEIASEKNSNKTNITTPLEGSMCISSVYSFSIKMNNYLLGGDYIISILG
NSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGETVVQKNIENQKSTASTPLVN
GVLIFSTVLLFLQLII*nvltktlfffkkknk*kkcfqiylkilkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---fnllqyf***nck*kkfkqnkyyhsigrlnvyl*clfffnqneqlplgw*lhylnsr
*l*cfkmlqacpskps*prt*kycitfnif*ttcfti*w*nsrskkyreskiycfnttsq
wsfnffnssfiftinnlkrfnknslff*kkk*ikkmfsnifenikkkkkk


Frame B:
---LIFYSTFSDEIASEKNSNKTNITTPLEGSMCISSVYSFSIKMNNYLLGGDYIISILG
NSDVSKCYKHVPVNQANQEPESIVLLSTSSEQLVLQSDGETVVQKNIENQKSTASTPLVN
GVLIFSTVLLFLQLII*nvltktlfffkkknk*kkcfqiylkilkkkkkk


Frame C:
---*sftvllvmklqvkkiqtkqilplhwkaqcvslvsilfqsk*titswvvitlsqf*v
tlmfqnatsmsq*tkltknlkvlyyfqhllnnlfynlmvkqsfkki*riknlllqhh*sm
ef*ffqqffyfyn**sktf*qklsfflkkkinkknvfkyi*ky*kkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK675 (SSK675Q) /CSM/SS/SSK6-D/SSK675Q.Seq.d/ 759 0.0
SSK461 (SSK461Q) /CSM/SS/SSK4-C/SSK461Q.Seq.d/ 759 0.0
SSK128 (SSK128Q) /CSM/SS/SSK1-B/SSK128Q.Seq.d/ 759 0.0
SSJ735 (SSJ735Q) /CSM/SS/SSJ7-B/SSJ735Q.Seq.d/ 759 0.0
SSI433 (SSI433Q) /CSM/SS/SSI4-B/SSI433Q.Seq.d/ 759 0.0
SSH287 (SSH287Q) /CSM/SS/SSH2-D/SSH287Q.Seq.d/ 759 0.0
SSG390 (SSG390Q) /CSM/SS/SSG3-D/SSG390Q.Seq.d/ 759 0.0
SSF601 (SSF601Q) /CSM/SS/SSF6-A/SSF601Q.Seq.d/ 759 0.0
SSF529 (SSF529Q) /CSM/SS/SSF5-B/SSF529Q.Seq.d/ 759 0.0
SSE522 (SSE522Q) /CSM/SS/SSE5-A/SSE522Q.Seq.d/ 759 0.0

own update 2002. 7. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU438831|BU438831.1 604142434F1 CSEQRBN11 Gallus gallus cDNA clone ChEST977c10 5', mRNA sequence. 36 1.1 2
AL596173|AL596173.1 Listeria innocua Clip11262 complete genome, segment 11/12. 38 1.2 6
AL162496|AL162496.11 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-237E3. 44 1.6 1
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 32 2.0 7
AX417036|AX417036.1 Sequence 4027 from Patent WO0228891. 38 2.0 6
AE010173|AE010173.1 Pyrococcus furiosus DSM 3638, section 48 of 173 of the complete genome. 40 2.7 2
AL845312|AL845312.3 Zebrafish DNA sequence from clone DKEY-287F10. 40 3.2 2
AL035394|AL035394.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F9D16 (ESSAII project). 40 3.3 3
AC073332|AC073332.13 Homo sapiens clone RP11-435M6, complete sequence. 38 3.9 3
AL954676|AL954676.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 4.3 4
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE008384_3094(AE008384|pid:none) Methanosarcina mazei strain Goe... 37 0.36
CP000685_2192(CP000685|pid:none) Flavobacterium johnsoniae UW101... 34 1.8
AM114193_2667(AM114193|pid:none) Uncultured methanogenic archaeo... 34 2.4
AY093107_1(AY093107|pid:none) Arabidopsis thaliana unknown prote... 34 2.4
AP002071_19(AP002071|pid:none) Oryza sativa Japonica Group genom... 33 5.3
AF250284_16(AF250284|pid:none) Amsacta moorei entomopoxvirus, co... 32 9.0
CP000968_380(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 32 9.0
CP001037_2648(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 32 9.0

protein update 2009. 1.26
PSORT

psg: 0.75 gvh: 0.54 alm: 0.26 top: 0.60 tms: 0.07 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.09 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSA269 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA269Z
3' end seq.
>SSA269Z.Seq
----------TTTTAATCTTTTACAGTACTTTTAGTGATGAAATTGCAAGTGAAAAAAAT
TCAAACAAAACAAATATTACCACTCCATTGGAAGGCTCAATGTGTATCTCTAGTGTCTAT
TCTTTTTCAATCAAAATGAACAATTACCTCTTGGGTGGTGATTACATTATCTCAATTCTA
GGTAACTCTGATGTTTCAAAATGCTACAAGCATGTCCCAGTAAACCAAGCTAACCAAGAA
CCTGAAAGTATTGTATTACTTTCAACATCTTCTGAACAACTTGTTTTACAATCTGATGGT
GAAACAGTCGTTCAAAAAAATATAGAGAATCAAAAATCTACTGCTTCAACACCACTAGTC
AATGGAGTTTTAATTTTTTCAACAGTTCTTTTATTTTTACAATTAATAATCTAAAACGTT
TTAACAAAAACTCTCTTTTTTTTTAAAAAAAAAAATAAATAAAAAAAATGTTTTCAAATA
TATTTGAAAATATTAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 504
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -