>SSA265 (SSA265Q) /CSM/SS/SSA2-C/SSA265Q.Seq.d/
CAAAGATTACAATTCAAGCAACAGGTACAACACCATGGAGAACACCAGATATTAAATATA
AGAGAAATGAACTTTATATTGATGTTGTGGAGAGTGTAAATTTGTTAATGTCAGCAGAAG
GTAATATATTAAGAGCAGATGTATCAGGACAGGTTATGATGAAATGTTTCCTTTCTGGTA
TGCCAGAATGTAAATTTGGTATGAATGATAAGGTTATTATGGATAGAGAGAAATCAACAA
ATGGTGGTAGTGCCGCTAGAAGTGGAGCACGTCGTGCAAATGGTATTGAAATCGATGATA
TTACATTCCATCAATGTGTACGTCTTGGTAAGTTTGATAGTGATCGTACAGTAAGXXXXX
XXXXX

KITIQATGTTPWRTPDIKYKRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGM
PECKFGMNDKVIMDREKSTNGGSAARSGARRANGIEIDDITFHQCVRLGKFDSDRTV---

Frame A:
qrlqfkqqvqhhgehqilniremnfilmlwrv*ic*cqqkviy*eqmyqdrl**nvsflv
cqnvnlv*mirllwiernqqmvvvplevehvvqmvlksmilhsinvyvlvslivivq*--
-


Frame B:
kdynssnryntmentry*i*ek*tly*ccgeckfvnvsrr*yiksrcirtgydemfpfwy
arm*iwye**gyyg*reinkww*cr*kwstsckwy*nr*yyipsmctsw*v***sys---


Frame C:
KITIQATGTTPWRTPDIKYKRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGM
PECKFGMNDKVIMDREKSTNGGSAARSGARRANGIEIDDITFHQCVRLGKFDSDRTV---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA265 (SSA265Q) /CSM/SS/SSA2-C/SSA265Q.Seq.d/                        704   0.0
CFJ660 (CFJ660Q) /CSM/CF/CFJ6-C/CFJ660Q.Seq.d/                        509   e-144
AFM745 (AFM745Q) /CSM/AF/AFM7-B/AFM745Q.Seq.d/                        496   e-139
AFM148 (AFM148Q) /CSM/AF/AFM1-B/AFM148Q.Seq.d/                        490   e-138
SFE493 (SFE493Q) /CSM/SF/SFE4-D/SFE493Q.Seq.d/                        462   e-129
SFL260 (SFL260Q) /CSM/SF/SFL2-C/SFL260Q.Seq.d/                        363   1e-99
AFJ822 (AFJ822Q) /CSM/AF/AFJ8-A/AFJ822Q.Seq.d/                        359   2e-98
AFN610 (AFN610Q) /CSM/AF/AFN6-A/AFN610Q.Seq.d/                        345   3e-94
SFJ890 (SFJ890Q) /CSM/SF/SFJ8-D/SFJ890Q.Seq.d/                        335   3e-91
AFK120 (AFK120Q) /CSM/AF/AFK1-A/AFK120Q.Seq.d/                        280   1e-74

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   704  0.0  1
U44890|U44890.1 Dictyostelium discoideum adaptin complex medium chain subunit (DdApm1) mRNA, complete cds.   680  0.0  1
BW200778|BW200778.1 Ciona intestinalis cDNA, clone:cicl075n09, 5' end, single read.    40  4e-07  3
BW191896|BW191896.1 Ciona intestinalis cDNA, clone:ciad095b21, 5' end, single read.    40  6e-07  3
BQ861698|BQ861698.1 QGC19F15.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19F15, mRNA sequence.    38  0.003  2
BU003650|BU003650.1 QGG35O09.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGG35O09, mRNA sequence.    38  0.012  2
AV343264|AV343264.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430536K07, 3' end partial sequence.    46  0.016  2
AI067868|AI067868.1 EST209552 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCG05 5' end similar to clathrin coat assembly protein AP50, mRNA sequence.    50  0.019  1
AI068134|AI068134.1 EST209824 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCP29 5' end similar to clathrin coat assembly protein AP50, mRNA sequence.    50  0.019  1
CC504602|CC504602.1 CH240_344H15.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_344H15, genomic survey sequence.    48  0.073  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_67(AC116977|pid:none) Dictyostelium discoideum chromoso...   203   1e-51
(P54672) RecName: Full=AP-2 complex subunit mu; AltName: Full=Mu...   203   1e-51
AE017342_187(AE017342|pid:none) Cryptococcus neoformans var. neo...   142   5e-33
BT073685_1(BT073685|pid:none) Oncorhynchus mykiss clone omyk-evo...   133   2e-30
BT045307_1(BT045307|pid:none) Salmo salar clone ssal-rgf-518-033...   133   2e-30
BC047180_1(BC047180|pid:none) Danio rerio zgc:85653, mRNA (cDNA ...   133   2e-30
(Q7ZW98) RecName: Full=AP-2 complex subunit mu-1-A; AltName: Ful...   133   2e-30
BX294009_23(BX294009|pid:none) Neurospora crassa DNA linkage gro...   132   4e-30
AK168414_1(AK168414|pid:none) Mus musculus 17 days embryo stomac...   132   5e-30
AK297849_1(AK297849|pid:none) Homo sapiens cDNA FLJ53069 complet...   132   5e-30

 psg: 0.84  gvh: 0.45  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SSA265 is mit

>SSA265F.Seq
CAAAGATTACAATTCAAGCAACAGGTACAACACCATGGAGAACACCAGATATTAAATATA
AGAGAAATGAACTTTATATTGATGTTGTGGAGAGTGTAAATTTGTTAATGTCAGCAGAAG
GTAATATATTAAGAGCAGATGTATCAGGACAGGTTATGATGAAATGTTTCCTTTCTGGTA
TGCCAGAATGTAAATTTGGTATGAATGATAAGGTTATTATGGATAGAGAGAAATCAACAA
ATGGTGGTAGTGCCGCTAGAAGTGGAGCACGTCGTGCAAATGGTATTGAAATCGATGATA
TTACATTCCATCAATGTGTACGTCTTGGTAAGTTTGATAGTGATCGTACAGTAAG-----
-----