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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA261
Library SS
(Link to library)
Clone ID SSA261
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04344-1
Original site URL
Representative seq. ID SSA261F
(Link to Original site)
Representative DNA sequence 
>SSA261 (SSA261Q) /CSM/SS/SSA2-C/SSA261Q.Seq.d/
GTATATATATAAATAAACTTTTTTAAAAAAAATGAAGCGTCCATCAACTCAAAGAGCACC
AGCAACTGTCAACAAAGGTGGTAACAGTATGATGAAATTTTACTCTGAAGATGCTATTGG
TTTAAAAGTTGGTCCAACTGCTGTTCTTTTTATGAGTTTAATTTTTATTGCTTTTGTCAT
TATTTTACACATCATGGGAAAATACACCAGATCATAGATTAACAAATACTATATAGGTTG
ATGTAAAAAAGAAAAAAAAAATAGTAATAACGGAATAAAACTTTAAAGAATAAAAAAAAA
AXXXXXXXXXX
sequence update 1999. 3. 8
Translated Amino Acid sequence 
yiyk*TFLKKMKRPSTQRAPATVNKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVI
ILHIMGKYTRS*inkyyig*ckkekknsnngikl*rikk---
Translated Amino Acid sequence (All Frames) 
Frame A:
vyi*inffkkneasinskstsncqqrw*qydeill*rcywfkswsnccsfyefnfycfch
yfthhgkihqiid*qilyrlm*krkkk***rnktlknkkk---


Frame B:
yiyk*TFLKKMKRPSTQRAPATVNKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVI
ILHIMGKYTRS*inkyyig*ckkekknsnngikl*rikk---


Frame C:
iyinklf*kk*svhqlkehqqlstkvvtv**nftlkmllv*klvqllffl*v*fllllsl
fytswentpdhrltnti*vdvkkkkkivite*nfke*kk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI429 (SSI429Q) /CSM/SS/SSI4-B/SSI429Q.Seq.d/                        436   e-122
SSA261 (SSA261Q) /CSM/SS/SSA2-C/SSA261Q.Seq.d/                        436   e-122
VSH479 (VSH479Q) /CSM/VS/VSH4-D/VSH479Q.Seq.d/                        424   e-118
VSE778 (VSE778Q) /CSM/VS/VSE7-D/VSE778Q.Seq.d/                        424   e-118
VSJ301 (VSJ301Q) /CSM/VS/VSJ3-A/VSJ301Q.Seq.d/                        418   e-116
VHK711 (VHK711Q) /CSM/VH/VHK7-A/VHK711Q.Seq.d/                         44   0.001
SHG834 (SHG834Q) /CSM/SH/SHG8-B/SHG834Q.Seq.d/                         44   0.001
VSJ868 (VSJ868Q) /CSM/VS/VSJ8-C/VSJ868Q.Seq.d/                         38   0.076
VSJ818 (VSJ818Q) /CSM/VS/VSJ8-A/VSJ818Q.Seq.d/                         38   0.076
VSJ624 (VSJ624Q) /CSM/VS/VSJ6-A/VSJ624Q.Seq.d/                         38   0.076
own update 2004. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA758843|S61B_HUMAN Protein transport pr, mRNA sequence.    50  0.016  1
BX530058|BX530058.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.24  1
AL596184|AL596184.9 Human DNA sequence from clone CTD-2552G1 on chromosome 6.    38  0.52  5
AC114931|AC114931.1 Homo sapiens chromosome 5 clone CTD-2020I24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38  0.69  2
AC090976|AC090976.2 Bos taurus clone RP42-400M23, complete sequence.    38  0.85  5
AC123728|AC123728.4 Mus musculus clone RP23-453L19, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  0.96  1
CA040241|CA040241.1 ssalshc503283 spleen Salmo salar cDNA, mRNA sequence.    44  0.96  1
BQ858777|BQ858777.1 QGC11D06.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC11D06, mRNA sequence.    44  0.96  1
AC110844|AC110844.5 Rattus norvegicus clone CH230-279M5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44  0.96  1
AC122870|AC122870.2 Mus musculus chromosome UNK clone RP23-103D17, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  0.96  1
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041270_1(BC041270|pid:none) Xenopus laevis Sec61 beta subunit,...    69   5e-11
AC025715_6(AC025715|pid:none) Caenorhabditis elegans cosmid Y38F...    68   1e-10
(Q9CQS8) RecName: Full=Protein transport protein Sec61 subunit b...    67   3e-10
BC111652_1(BC111652|pid:none) Bos taurus Sec61 beta subunit, mRN...    67   3e-10
AK223384_1(AK223384|pid:none) Homo sapiens mRNA for protein tran...    66   3e-10
AF159543_1(AF159543|pid:none) Lapemis hardwickii transport prote...    65   6e-10
BC076372_1(BC076372|pid:none) Danio rerio zgc:92922, mRNA (cDNA ...    65   1e-09
DQ214346_1(DQ214346|pid:none) Taeniopygia guttata clone 0063P000...    65   1e-09
AY826154_1(AY826154|pid:none) Aedes albopictus clone AL_217 tran...    65   1e-09
BT049356_1(BT049356|pid:none) Salmo salar clone ssal-rgb2-586-26...    63   3e-09
protein update 2009. 6. 8
PSORT 

 psg: 0.63  gvh: 0.46  alm: 0.14  top: 0.70  tms: 0.07  mit: 0.46  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.21  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSA261 is nuc
5' end seq. ID SSA261F
5' end seq. 
>SSA261F.Seq
GTATATATATAAATAAACTTTTTTAAAAAAAATGAAGCGTCCATCAACTCAAAGAGCACC
AGCAACTGTCAACAAAGGTGGTAACAGTATGATGAAATTTTACTCTGAAGATGCTATTGG
TTTAAAAGTTGGTCCAACTGCTGTTCTTTTTATGAGTTTAATTTTTATTGCTTTTGTCAT
TATTTTACACATCATGGGAAAATACACCAGATCATAGATTAACAAATACTATATAGGTTG
ATGTAAAAAAGAAAAAAAAAATAGTAATAACGGAATAAAACTTTAAAGAATAAAAAAAAA
A----------
Length of 5' end seq. 301
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -