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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA249
Library SS
(Link to library)
Clone ID SSA249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07966-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSA249 (SSA249Q) /CSM/SS/SSA2-C/SSA249Q.Seq.d/
ACTTATCGTCACAATTCAAGTTTTTTTTTTTTTTTTTATTTCACTCTCTTTTTTTCTATT
TTTTTATTTTTTTAAATAGTTCTTTTTTATATAAAAGTAAAAGAAAACAATAAAATAAAT
AAATAAATAAACAAAACAAAGTAAAATAACCGCAAAAATTAAAAAGGAAAATAATAAAAA
AAATTTTTTTTTTAAAAAATTTAAAAAATTAAAAAAACTACAACAGTAACAGATTXXXXX
XXXXX
sequence update 1999. 3. 8
Translated Amino Acid sequence 
LSSQFKFFFFFLFHSLFFYFFIFLNSSFLYKSKRKQ*nk*inkqnkvk*pqklkrkiikk
ifflknlkn*knynsnr---
Translated Amino Acid sequence (All Frames) 
Frame A:
tyrhnssfffffyftlffsiflff*ivlfyikvkennkink*inktk*nnrkn*kgk**k
kfff*ki*kikktttvtd---


Frame B:
livtiqvfffffislsfflffyffk*fffi*k*kktik*ink*tkqskitakikkennkk
nfffkkfkklkklqq*q---


Frame C:
LSSQFKFFFFFLFHSLFFYFFIFLNSSFLYKSKRKQ*nk*inkqnkvk*pqklkrkiikk
ifflknlkn*knynsnr---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA662 (SSA662Q) /CSM/SS/SSA6-C/SSA662Q.Seq.d/                         40   0.015
SSA249 (SSA249Q) /CSM/SS/SSA2-C/SSA249Q.Seq.d/                         40   0.015
SSF486 (SSF486Q) /CSM/SS/SSF4-D/SSF486Q.Seq.d/                         36   0.23
own update 2000. 8.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF317500|AF317500.1 Dictyostelium discoideum strain AX4 putative transporter protein SSA662 (ssa662) mRNA, complete cds.    40  9e-04  2
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    40  0.012  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40  0.076  2
dna update 2003. 7.13
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 40,713,300
protein update 2009. 6. 8
PSORT 

 psg: 1.00  gvh: 0.45  alm: 0.25  top: 0.63  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.34  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSA249 is cyt
5' end seq. ID SSA249F
5' end seq. 
>SSA249F.Seq
NACTTATCGTCACAATTCAAGTTTTTTTTTTTTTTTTTATTTCACTCTCTTTTTTTCTAT
TTTTTTATTTTTTTAAATAGTTCTTTTTTATATAAAAGTAAAAGAAAACAATAAAATAAA
TAAATAAATAAACAAAACAAAGTAAAATAACCGCAAAAATTAAAAAGGAAAATAATAAAA
AAAATTTTTTTTTTAAAAAATTTAAAAAATTAAAAAAACTACAACAGTAACAGATT----
------
Length of 5' end seq. 236
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -