>SSA248 (SSA248Q) /CSM/SS/SSA2-B/SSA248Q.Seq.d/
XXXXXXXXXXTTTAGATTGGGTAGATTTTTACTTTAAAAATACACCTATTGCAGTGGGTG
AAACCGTTGGAATCTTGTCAAAGCAAGTTGGTTTTTGGATTCTATCATTTGCTCGTATCA
ATTATCTTTACGATGGTGATCAAGAAGATGGTTCAATTAAATTTGGTTATTCATATGGTA
CACTAAAGGATCATGTTGAAAAAGGTGAAGAAAGATTCGTCATTGAATGGGTACGTGATC
CTGATGGTGCCCCTGACAAAGGTGCTGTTTATTATGAAATGTTATCCTTTTCAGAACCAA
GCTATTGGTTATCTCAATTGGGTTATCCTGTAACTCGTTACTTTCAAAATAAATTTGTTG
TTGATTCATGTAATCAAATGTTAAAAGCAGTGGGTTCAAATCAAAATGTTAGACATGTAT
AATTAAGTATAANNAAAATAATAATAAAATAAATAAATAAAAAAAAATAAAATNAAATAA
ATTATAAATTTATTAAAAATAAAAAAAGA

---LDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGDQEDGSIKFGYSYGT
LKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNKFVV
DSCNQMLKAVGSNQNVRHV*lsixkiiik*inkkk*nxinykfiknkkr

Frame A:
---LDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGDQEDGSIKFGYSYGT
LKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNKFVV
DSCNQMLKAVGSNQNVRHV*lsixkiiik*inkkk*nxinykfiknkkr


Frame B:
---*ig*iftlkihllqwvkplescqsklvfgfyhllvsiiftmvikkmvqlnlvihmvh
*rimlkkvkkdsslngyvilmvpltkvlfimkcypfqnqaigylnwvil*lvtfkinlll
ihvikc*kqwvqikmldmyn*v*xk***nk*ikknkxk*iinllkikk


Frame C:
---rlgrfll*kytycsg*nrwnlvkaswfldsiicsyqlslrw*srrwfn*iwlfiwyt
kgsc*kr*rkirh*mgt*s*wcp*qrccll*nvilfrtkllvisiglscnsllsk*icc*
fm*snvkssgfkskc*tciikyxxnnnkink*kkikxnkl*iy*k*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA248 (SSA248Q) /CSM/SS/SSA2-B/SSA248Q.Seq.d/                        837   0.0
SSI354 (SSI354Q) /CSM/SS/SSI3-C/SSI354Q.Seq.d/                        833   0.0
SLA493 (SLA493Q) /CSM/SL/SLA4-D/SLA493Q.Seq.d/                         40   0.032
VHK245 (VHK245Q) /CSM/VH/VHK2-B/VHK245Q.Seq.d/                         38   0.13
SSD358 (SSD358Q) /CSM/SS/SSD3-C/SSD358Q.Seq.d/                         36   0.50
SHL760 (SHL760Q) /CSM/SH/SHL7-C/SHL760Q.Seq.d/                         36   0.50
SHK201 (SHK201Q) /CSM/SH/SHK2-A/SHK201Q.Seq.d/                         36   0.50
SHE261 (SHE261Q) /CSM/SH/SHE2-C/SHE261Q.Seq.d/                         36   0.50
SHD102 (SHD102Q) /CSM/SH/SHD1-A/SHD102Q.Seq.d/                         36   0.50
CHN436 (CHN436Q) /CSM/CH/CHN4-B/CHN436Q.Seq.d/                         36   0.50

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115594|AC115594.2 Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence.   837  0.0  1
AQ883067|AQ883067.1 HS_5456_A2_B09_SP6E RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=9224 Col=18 Row=C, DNA sequence.    42  0.062  2
BQ299169|BQ299169.1 sao43h10.y1 Gm-c1054 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1054-7267 5' similar to SW:GGH_SOYBN P93164 GAMMA-GLUTAMYL HYDROLASE PRECURSOR ;, mRNA sequence.    48  0.10  1
AC118480|AC118480.3 Homo sapiens BAC clone RP11-393K13 from 4, complete sequence.    44  1.6  1
BM336672|BM336672.1 MEST197-C08.T3 ISUM5-RN Zea mays cDNA clone MEST197-C08 3', mRNA sequence.    44  1.6  1
AF512833|AF512833.1 Bear canyon virus strain A0060209 glycoprotein precursor and nucleocapsid protein genes, complete cds.    44  1.6  1
BM335818|BM335818.1 MEST161-G02.T3 ISUM5-RN Zea mays cDNA clone MEST161-G02 3', mRNA sequence.    44  1.6  1
BX294118|BX294118.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    40  3.2  2
BH552529|BH552529.1 BOHNE06TF BOHN Brassica oleracea genomic clone BOHNE06, DNA sequence.    34  3.4  2
AL418322|AL418322.1 T3 end of clone AX0AA030G02 of library AX0AA from strain CBS 7064 of Pichia farinosa.    36  4.7  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM746676_917(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...    83   4e-15
CR954209_54(CR954209|pid:none) Ostreococcus tauri strain OTTH059...    73   3e-12
BX294137_316(BX294137|pid:none) Rhodopirellula baltica SH 1 comp...    70   2e-11
AC150705_19(AC150705|pid:none) Medicago truncatula clone mth2-13...    66   4e-10
BT052408_1(BT052408|pid:none) Medicago truncatula clone MTYFD_FE...    65   7e-10
AK071651_1(AK071651|pid:none) Oryza sativa Japonica Group cDNA c...    64   2e-09
AK101392_1(AK101392|pid:none) Oryza sativa Japonica Group cDNA c...    64   2e-09
AC113930_4(AC113930|pid:none) Oryza sativa (japonica cultivar-gr...    64   2e-09
CR855034_6(CR855034|pid:none) Oryza sativa (indica cultivar-grou...    63   5e-09
CP000589_58(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    62   6e-09

 psg: 0.75  gvh: 0.52  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA248 is cyt

>SSA248Z.Seq
----------TTTAGATTGGGTAGATTTTTACTTTAAAAATACACCTATTGCAGTGGGTG
AAACCGTTGGAATCTTGTCAAAGCAAGTTGGTTTTTGGATTCTATCATTTGCTCGTATCA
ATTATCTTTACGATGGTGATCAAGAAGATGGTTCAATTAAATTTGGTTATTCATATGGTA
CACTAAAGGATCATGTTGAAAAAGGTGAAGAAAGATTCGTCATTGAATGGGTACGTGATC
CTGATGGTGCCCCTGACAAAGGTGCTGTTTATTATGAAATGTTATCCTTTTCAGAACCAA
GCTATTGGTTATCTCAATTGGGTTATCCTGTAACTCGTTACTTTCAAAATAAATTTGTTG
TTGATTCATGTAATCAAATGTTAAAAGCAGTGGGTTCAAATCAAAATGTTAGACATGTAT
AATTAAGTATAANNAAAATAATAATAAAATAAATAAATAAAAAAAAATAAAATNAAATAA
ATTATAAATTTATTAAAAATAAAAAAAGAN