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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA242
Library SS
(Link to library)
Clone ID SSA242
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04342-1
Original site URL
Representative seq. ID SSA242E
(Link to Original site)
Representative DNA sequence 
>SSA242 (SSA242Q) /CSM/SS/SSA2-B/SSA242Q.Seq.d/
CAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCAGTTGG
TTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATAGTTGT
TGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGTTTTTC
AAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATTACATC
TGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCACTTGC
ATTTTCAATGGCAGGCGGTGTTACAGTTTATGCAACAATTATTACATTCCTTTGGTTCTT
TAATAGACATAATGATGAAGACAATAATTGGTAAAAAAAAAAAAAAAAAAACAATTAATA
ATAATATAAACATCAATAGAAAGAAAAAAAAGAAAAATGAAAAAAAAAATGAAAAAAAAA
AAAACCTGTAAATTTAAAACAATACATCAAAACTTTTGATTTTATATTAATCAATTTGCA
TCGTCACACAATATTTTTTAATTCCCTTTAAAGTTTTGAGAAAACAAAACAAAAATAAAA
TAAAATAAAAAAATAAAATAAA
sequence update 1999. 6. 8
Translated Amino Acid sequence 
KKMGHDIKAIIGFSCAFAVGLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDSFS
SEKGTFEDIGLFLTGLFITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFF
NRHNDEDNNW*kkkkknn***ykhq*kekkek*kkk*kkkkpvnlkqyiktfdfilinlh
rhtiffnsl*sfektkqk*nkikk*nk
Translated Amino Acid sequence (All Frames) 
Frame A:
qkngt*y*snyrfflricswfii*yfsmysfslwlsnyscciifscsvpkyim*k*r*ff
k*krni*rywvifnrsiyyiwicnsndfspfryyfrkstcifngrrcyslcnnyyiplvl
**t***rq*lvkkkkkkqliii*tsierkkrkmkkkmkkkktckfktihqnf*fyinqfa
sshnif*fplkf*enktkik*nkkik*


Frame B:
KKMGHDIKAIIGFSCAFAVGLLFNILACIVSHSGYPIIVVASYFLAPFPNILCRNRDSFS
SEKGTFEDIGLFLTGLFITSGFAIPMILAHSDIISGKALAFSMAGGVTVYATIITFLWFF
NRHNDEDNNW*kkkkknn***ykhq*kekkek*kkk*kkkkpvnlkqyiktfdfilinlh
rhtiffnsl*sfektkqk*nkikk*nk


Frame C:
kkwdmilkql*vflahlqlvyylif*hv*fltlviql*llhhifllrsqiyyveieivfq
vkkehlkilgyf*qvyllhldlqfq*f*piqilfqekhlhfqwqavlqfmqqllhsfgsl
idimmktiigkkkkkktinnnininrkkkkknekknekkknl*i*nntskllily*sici
vtqyflipfkvlrkqnknkik*knki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK203 (SSK203Q) /CSM/SS/SSK2-A/SSK203Q.Seq.d/                        761   0.0
SSA242 (SSA242Q) /CSM/SS/SSA2-B/SSA242Q.Seq.d/                        761   0.0
SSA421 (SSA421Q) /CSM/SS/SSA4-A/SSA421Q.Seq.d/                        753   0.0
SSD585 (SSD585Q) /CSM/SS/SSD5-D/SSD585Q.Seq.d/                        741   0.0
VSF173 (VSF173Q) /CSM/VS/VSF1-D/VSF173Q.Seq.d/                        567   e-161
SSB817 (SSB817Q) /CSM/SS/SSB8-A/SSB817Q.Seq.d/                        392   e-108
SHL471 (SHL471Q) /CSM/SH/SHL4-C/SHL471Q.Seq.d/                        113   3e-24
VFL441 (VFL441Q) /CSM/VF/VFL4-B/VFL441Q.Seq.d/                         38   0.16
VFD336 (VFD336Q) /CSM/VF/VFD3-B/VFD336Q.Seq.d/                         38   0.16
SFG648 (SFG648Q) /CSM/SF/SFG6-B/SFG648Q.Seq.d/                         38   0.16
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BI413826|BI413826.1 602991863F1 NCI_CGAP_Lu33 Mus musculus cDNA clone IMAGE:5147726 5', mRNA sequence.    52  0.008  1
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    36  0.077  5
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          34  0.13  9
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    32  0.15  9
AC130799|AC130799.16 Medicago truncatula clone mth2-34b13, WORKING DRAFT SEQUENCE, 1 ordered piece.    38  0.36  7
AY077835|AY077835.1 Goatpox virus strain Pellor, complete genome.    36  0.47  5
AY077836|AY077836.1 Goatpox virus strain G20-LKV, complete genome.    36  0.47  5
AF409138|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome.    36  0.48  5
AF325528|AF325528.1 Lumpy skin disease virus isolate Neethling 2490, complete genome.    36  0.48  5
AF409137|AF409137.1 Lumpy skin disease virus isolate Neethling Warmbaths LW, complete genome.    36  0.48  5
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX294020_35(BX294020|pid:none) Neurospora crassa DNA linkage gro...    98   2e-19
CU640366_582(CU640366|pid:none) Podospora anserina genomic DNA c...    95   2e-18
CR382132_95(CR382132|pid:none) Yarrowia lipolytica strain CLIB12...    95   2e-18
AM270330_34(AM270330|pid:none) Aspergillus niger contig An15c003...    94   3e-18
AP007164_57(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...    93   5e-18
CU928170_293(CU928170|pid:none) Kluyveromyces thermotolerans str...    93   5e-18
AM920435_1159(AM920435|pid:none) Penicillium chrysogenum Wiscons...    92   9e-18
CR382125_971(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    91   3e-17
CU928178_205(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    90   6e-17
AE017349_162(AE017349|pid:none) Cryptococcus neoformans var. neo...    87   4e-16
protein update 2009. 7. 5
PSORT 

 psg: 0.96  gvh: 0.67  alm: 0.30  top: 0.33  tms: 0.20  mit: 0.29  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 32.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSA242 is mit
5' end seq. ID SSA242F
5' end seq. 
>SSA242F.Seq
CAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCAGTTGG
TTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATAGTTGT
TGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGTTTTTC
AAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATTACATC
TGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCACTTGC
ATTTTCAATGGCAGGCGGTGTTACAGT----------
Length of 5' end seq. 327
3' end seq. ID SSA242Z
3' end seq. 
>SSA242Z.Seq
----------GCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGA
TAGTTTTTCAAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATT
TATTACATCTGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAA
AGCACTTGCATTTTCAATGGCAGGCGGTGTTACAGTTTATGCAACAATTATTACATTCCT
TTGGTTCTTTAATAGACATAATGATGAAGACAATAATTGGTAAAAAAAAAAAAAAAAAAA
CAATTAATAATAATATAAACATCAATAGAAAGAAAAAAAAGAAAAATGAAAAAAAAAATG
AAAAAAAAAAAAACCTGTAAATTTAAAACAATACATCAAAACTTTTGATTTTATATTAAT
CAATTTGCATCGTCACACAATATTTTTTAATTCCCTTTAAAGTTTTGAGAAAACAAAACA
AAAATAAAATAAAATAAAAAAATAAAATAAA
Length of 3' end seq. 501
Connected seq. ID SSA242P
Connected seq. 
>SSA242P.Seq
CAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCAGTTGG
TTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATAGTTGT
TGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGTTTTTC
AAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATTACATC
TGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCACTTGC
ATTTTCAATGGCAGGCGGTGTTACAGT----------GCATCATATTTTCTTGCTCCGTT
CCCAAATATATTATGTAGAAATAGAGATAGTTTTTCAAGTGAAAAAGGAACATTTGAAGA
TATTGGGTTATTTTTAACAGGTCTATTTATTACATCTGGATTTGCAATTCCAATGATTTT
AGCCCATTCAGATATTATTTCAGGAAAAGCACTTGCATTTTCAATGGCAGGCGGTGTTAC
AGTTTATGCAACAATTATTACATTCCTTTGGTTCTTTAATAGACATAATGATGAAGACAA
TAATTGGTAAAAAAAAAAAAAAAAAAACAATTAATAATAATATAAACATCAATAGAAAGA
AAAAAAAGAAAAATGAAAAAAAAAATGAAAAAAAAAAAAACCTGTAAATTTAAAACAATA
CATCAAAACTTTTGATTTTATATTAATCAATTTGCATCGTCACACAATATTTTTTAATTC
CCTTTAAAGTTTTGAGAAAACAAAACAAAAATAAAATAAAATAAAAAAATAAAATAAA
Length of connected seq. 828
Full length Seq ID SSA242E
Full length Seq. 
>SSA242E.Seq
CAAAAAAATGGGACATGATATTAAAGCAATTATAGGTTTTTCTTGCGCATTTGCAGTTGG
TTTATTATTTAATATTTTAGCATGTATAGTTTCTCACTCTGGTTATCCAATTATAGTTGT
TGCATCATATTTTCTTGCTCCGTTCCCAAATATATTATGTAGAAATAGAGATAGTTTTTC
AAGTGAAAAAGGAACATTTGAAGATATTGGGTTATTTTTAACAGGTCTATTTATTACATC
TGGATTTGCAATTCCAATGATTTTAGCCCATTCAGATATTATTTCAGGAAAAGCACTTGC
ATTTTCAATGGCAGGCGGTGTTACAGTTTATGCAACAATTATTACATTCCTTTGGTTCTT
TAATAGACATAATGATGAAGACAATAATTGGTAAAAAAAAAAAAAAAAAAACAATTAATA
ATAATATAAACATCAATAGAAAGAAAAAAAAGAAAAATGAAAAAAAAAATGAAAAAAAAA
AAAACCTGTAAATTTAAAACAATACATCAAAACTTTTGATTTTATATTAATCAATTTGCA
TCGTCACACAATATTTTTTAATTCCCTTTAAAGTTTTGAGAAAACAAAACAAAAATAAAA
TAAAATAAAAAAATAAAATAAA
Length of full length seq. 622