SSA230
Library SS
(Link to library)
Clone ID SSA230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04338-1
Original site URL
Representative seq. ID SSA230E
(Link to Original site)
Representative DNA sequence
>SSA230 (SSA230Q) /CSM/SS/SSA2-B/SSA230Q.Seq.d/
GGATGAAGGAAGTAATACTGAACATTCAATCAAAGAAATTATTAATCATGTATTTCAAAA
AGATAAGGATTTGTTATACCTAATTTCTGTAGCAGAGGATCCAATTACATTCCCATCGTC
CGCAATTTCTGCGGTTGTTGTTTCAGAAACATTGAAAGCAATTGAGAGAAAACACAAATC
AATTTTAATAAACAGAGCTAATTTAAAAAATTTAGGTGTTCAAAATGTTAAAGCATTGTT
AGGCCNTGGAAATCATGTTGGAGAAGCTGTAATTAAAGCNGCNCGTTGAAAAAGTTATTC
CCTATCTGGTGGTTGGGAGGGGGGGGATTGGCCCAATCAAAAGGATATTCATTGGCTCAA
CTTCNCGTTACTTCCTTGGACTTGCAAAGTGTTTTGTTTTCTGTTTCAAAGACGGTTCAA
ATGCTTTTGATCAAGCCCCTTCATCCAATGGCTCTTCCCCCGGGCCCCTTGGTTTCAATG
GAAGTTTTGGTGTTAATAAAGAAACTGCCCCTTTCAATGATTTTGAACATTTGCCCTTAC
CCGTTTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATA
AAAAGATACAACACTCAATAATATACAAAAAATTGTATTTATCATTGAATACAATTAAGA
AACACAAAAGGAGAAGAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence
g*rk*y*tfnqrny*sciskr*gfvipnfcsrgsnyipivrnfcgccfrniesn*ektqi
nfnkqs*fkkfrcskc*sivrpwkscwrscn*SXXLKKLFPIWWLGGGGLAQSKGYSLAQ
LXVTSLDLQSVLFSVSKTVQMLLIKPLHPMALPPGPLVSMEVLVLIKKLPLSMILNICPY
PFKKKKKKKKKKKKKKKKKIKRYNTQ*ytknciyh*iqlrntkgeek


Translated Amino Acid sequence (All Frames)
Frame A:
g*rk*y*tfnqrny*sciskr*gfvipnfcsrgsnyipivrnfcgccfrniesn*ektqi
nfnkqs*fkkfrcskc*sivrpwkscwrscn*SXXLKKLFPIWWLGGGGLAQSKGYSLAQ
LXVTSLDLQSVLFSVSKTVQMLLIKPLHPMALPPGPLVSMEVLVLIKKLPLSMILNICPY
PFKKKKKKKKKKKKKKKKKIKRYNTQ*ytknciyh*iqlrntkgeek


Frame B:
degsntehsikeiinhvfqkdkdllylisvaedpitfpssaisavvvsetlkaierkhks
ilinranlknlgvqnvkallgxgnhvgeavikaar*ksyslsggweggdwpnqkdihwln
fxllpwtckvfcflfqrrfkcf*sspfiqwlfprapwfqwkfwc**rncpfq*f*tfalt
rlrkkkkkkkkkkkkkkkr*kdttlnniqkivfiieyn*etqkekkk


Frame C:
mkevilniqskkllimyfkkiricyt*fl*qriqlhshrpqflrllfqkh*kqlrentnq
f**teli*ki*vfkmlkhc*axeimlekl*lkxxvekvipylvvgrggigpikrifigst
sryflglakcfvfcfkdgsnafdqapssngsspgplgfngsfgvnketapfndfehlplp
v*ekkkkkkkkkkkkkkkdkkiqhsiiykklylslntikkhkrrrkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSA230 (SSA230Q) /CSM/SS/SSA2-B/SSA230Q.Seq.d/ 1017 0.0
SSF243 (SSF243Q) /CSM/SS/SSF2-B/SSF243Q.Seq.d/ 686 0.0
SSL242 (SSL242Q) /CSM/SS/SSL2-B/SSL242Q.Seq.d/ 472 e-132
CHQ620 (CHQ620Q) /CSM/CH/CHQ6-A/CHQ620Q.Seq.d/ 38 0.17
CHP215 (CHP215Q) /CSM/CH/CHP2-A/CHP215Q.Seq.d/ 38 0.17
CHM531 (CHM531Q) /CSM/CH/CHM5-B/CHM531Q.Seq.d/ 38 0.17
CHL585 (CHL585Q) /CSM/CH/CHL5-D/CHL585Q.Seq.d/ 38 0.17
CHL338 (CHL338Q) /CSM/CH/CHL3-B/CHL338Q.Seq.d/ 38 0.17
CHJ855 (CHJ855Q) /CSM/CH/CHJ8-C/CHJ855Q.Seq.d/ 38 0.17
CHJ803 (CHJ803Q) /CSM/CH/CHJ8-A/CHJ803Q.Seq.d/ 38 0.17

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 289 0.0 6
AC096445|AC096445.6 Rattus norvegicus clone CH230-112K3, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 40 0.029 6
AF142677|AF142677.4 Bacillus megaterium plasmid pBM400, complete sequence. 42 0.17 3
AL035476|AL035476.7 Plasmodium falciparum MAL4P3. 34 0.22 7
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4. 42 0.23 5
BU526159|BU526159.1 AGENCOURT_10173134 NIH_MGC_144 Mus musculus cDNA clone IMAGE:6534825 5', mRNA sequence. 40 0.23 2
AL928906|AL928906.4 Zebrafish DNA sequence from clone RP71-34G2. 36 0.31 3
BM169088|BM169088.1 EST571611 PyBS Plasmodium yoelii yoelii cDNA clone PYCPL65 5' end, mRNA sequence. 34 0.49 2
AX417038|AX417038.1 Sequence 4029 from Patent WO0228891. 46 0.56 1
AL365219|AL365219.17 Human DNA sequence from clone RP11-529A21 on chromosome 6. 38 0.63 2
dna update 2003. 7.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ199645_1(DQ199645|pid:none) Astragalus sinicus isolate AsD243 ... 31 0.040
CP000386_3067(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 38 0.33
AY088520_1(AY088520|pid:none) Arabidopsis thaliana clone 7474 mR... 37 0.72
AY781348_1(AY781348|pid:none) Triticum aestivum USP family prote... 37 0.72
AC016795_22(AC016795|pid:none) Arabidopsis thaliana chromosome I... 37 0.72
EF083373_1(EF083373|pid:none) Picea sitchensis clone WS02716_F17... 37 0.72
EU964050_1(EU964050|pid:none) Zea mays clone 275464 ethylene res... 36 0.95
AL163792_17(AL163792|pid:none) Arabidopsis thaliana DNA chromoso... 36 0.95
EU970188_1(EU970188|pid:none) Zea mays clone 341749 USP family p... 36 0.95
BT042775_1(BT042775|pid:none) Zea mays full-length cDNA clone ZM... 36 0.95
protein update 2009. 3. 4
PSORT

psg: 0.93 gvh: 0.59 alm: 0.31 top: 1.47 tms: 0.07 mit: 0.28 mip: 0.00
nuc: 1.20 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.22 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSA230 is nuc

5' end seq. ID SSA230F
5' end seq.
>SSA230F.Seq
GGATGAAGGAAGTAATACTGAACATTCAATCAAAGAAATTATTAATCATGTATTTCAAAA
AGATAAGGATTTGTTATACCTAATTTCTGTAGCAGAGGATCCAATTACATTCCCATCGTC
CGCAATTTCTGCGGTTGTTGTTTCAGAAACATTGAAAGCAATTGAGAGAAAACACAAATC
AATTTTAATAAACAGAGCTAATTTATGTAAAAATTTAGGTGTTCAAAATGTTAAAGCATT
GTTAGGCCATGGAAATCATGTTGGAGAAGCTGTAATTAAAGCAGCA----------
Length of 5' end seq. 286
3' end seq. ID SSA230Z
3' end seq.
>SSA230Z.Seq
----------AAAAATTTNGGTGTTCAAAATGTTAAAGCATTGTTAGGCCCTGGAAATCA
TGTTGGAGAAGCTGTAATTAAAGCCGCCGTTGAAAAAGTTATTCCCTATCTGGTGGTTGG
GAGGGGGGGGATTGGCCCAATCAAAAGGATATTCATTGGCTCAACTTCNCGTTACTTCCT
TGGACTTGCAAAGTGTTTTGTTTTCTGTTTCAAAGACGGTTCAAATGCTTTTGATCAAGC
CCCTTCATCCAATGGCTCTTCCCCCGGGCCCCTTGGTTTCAATGGAAGTTTTGGTGTTAA
TAAAGAAACTGCCCCTTTCAATGATTTTGAACATTTGCCCTTACCCGTTTAAGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAGATACAACACTC
AATAATATACAAAAAATTGTATTTATCATTGAATACAATTAAGAAACACAAAAGGAGAAG
AAAAAAAAAATAAAC
Length of 3' end seq. 485
Connected seq. ID SSA230P
Connected seq.
>SSA230P.Seq
GGATGAAGGAAGTAATACTGAACATTCAATCAAAGAAATTATTAATCATGTATTTCAAAA
AGATAAGGATTTGTTATACCTAATTTCTGTAGCAGAGGATCCAATTACATTCCCATCGTC
CGCAATTTCTGCGGTTGTTGTTTCAGAAACATTGAAAGCAATTGAGAGAAAACACAAATC
AATTTTAATAAACAGAGCTAATTTATGTAAAAATTTAGGTGTTCAAAATGTTAAAGCATT
GTTAGGCCATGGAAATCATGTTGGAGAAGCTGTAATTAAAGCAGCA----------AAAA
ATTTNGGTGTTCAAAATGTTAAAGCATTGTTAGGCCCTGGAAATCATGTTGGAGAAGCTG
TAATTAAAGCCGCCGTTGAAAAAGTTATTCCCTATCTGGTGGTTGGGAGGGGGGGGATTG
GCCCAATCAAAAGGATATTCATTGGCTCAACTTCNCGTTACTTCCTTGGACTTGCAAAGT
GTTTTGTTTTCTGTTTCAAAGACGGTTCAAATGCTTTTGATCAAGCCCCTTCATCCAATG
GCTCTTCCCCCGGGCCCCTTGGTTTCAATGGAAGTTTTGGTGTTAATAAAGAAACTGCCC
CTTTCAATGATTTTGAACATTTGCCCTTACCCGTTTAAGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGATAAAAAGATACAACACTCAATAATATACAAAA
AATTGTATTTATCATTGAATACAATTAAGAAACACAAAAGGAGAAGAAAAAAAAAATAAA
C
Length of connected seq. 771
Full length Seq ID SSA230E
Full length Seq.
>SSA230E.Seq
GGATGAAGGAAGTAATACTGAACATTCAATCAAAGAAATTATTAATCATGTATTTCAAAA
AGATAAGGATTTGTTATACCTAATTTCTGTAGCAGAGGATCCAATTACATTCCCATCGTC
CGCAATTTCTGCGGTTGTTGTTTCAGAAACATTGAAAGCAATTGAGAGAAAACACAAATC
AATTTTAATAAACAGAGCTAATTTAAAAAATTTAGGTGTTCAAAATGTTAAAGCATTGTT
AGGCCNTGGAAATCATGTTGGAGAAGCTGTAATTAAAGCNGCNCGTTGAAAAAGTTATTC
CCTATCTGGTGGTTGGGAGGGGGGGGATTGGCCCAATCAAAAGGATATTCATTGGCTCAA
CTTCNCGTTACTTCCTTGGACTTGCAAAGTGTTTTGTTTTCTGTTTCAAAGACGGTTCAA
ATGCTTTTGATCAAGCCCCTTCATCCAATGGCTCTTCCCCCGGGCCCCTTGGTTTCAATG
GAAGTTTTGGTGTTAATAAAGAAACTGCCCCTTTCAATGATTTTGAACATTTGCCCTTAC
CCGTTTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGATA
AAAAGATACAACACTCAATAATATACAAAAAATTGTATTTATCATTGAATACAATTAAGA
AACACAAAAGGAGAAGAAAAAAA
Length of full length seq. 683