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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA225
Library SS
(Link to library)
Clone ID SSA225
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSA225Z
(Link to Original site)
Representative DNA sequence 
>SSA225 (SSA225Q) /CSM/SS/SSA2-B/SSA225Q.Seq.d/
XXXXXXXXXXTCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGT
TACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCAC
TGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGGGGAA
AGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAACACAAATA
AAATATGACATATAATAAAAAATAAAAAAAAACAAAAAAAAAAAAAAAAAAAGATTAA
sequence update 1997. 6. 6
Translated Amino Acid sequence 
---SSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKGKV
L*kkknnkklipnnl*hk*nmtynkk*kktkkkkkkd*
Translated Amino Acid sequence (All Frames) 
Frame A:
---qvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqidtkhqrgk
yfkkkkiikn*yqiiyntnki*hiiknkkkqkkkkkki


Frame B:
---k*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*irstkges
tlkkkk**kintk*fitqikydi**kikknkkkkkkrl


Frame C:
---SSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKGKV
L*kkknnkklipnnl*hk*nmtynkk*kktkkkkkkd*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA225 (SSA225Q) /CSM/SS/SSA2-B/SSA225Q.Seq.d/                        353   9e-97
SSM176 (SSM176Q) /CSM/SS/SSM1-D/SSM176Q.Seq.d/                        337   6e-92
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        337   6e-92
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                        337   6e-92
SSL583 (SSL583Q) /CSM/SS/SSL5-D/SSL583Q.Seq.d/                        337   6e-92
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        337   6e-92
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        337   6e-92
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        337   6e-92
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        337   6e-92
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        337   6e-92
own update 2002. 8.14
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   329  e-101  2
AL121580|AL121580.8 Human DNA sequence from clone RP13-455A7 on chromosome 22 Contains  an STS and GSSs.    46  0.23  1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46  0.23  1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46  0.23  1
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46  0.43  2
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    40  0.60  4
AC133735|AC133735.2 Rattus norvegicus clone CH230-162F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.92  1
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44  2.2  3
AA424303|AA424303.1 zv90c04.r1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE:767046 5', mRNA sequence.    38  2.3  2
AC006052|AC006052.5 Homo sapiens chromosome 4 clone C0281M17 map 4p16.3, complete sequence.    34  2.4  5
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...    73   3e-12
FN392319_1302(FN392319|pid:none) Pichia pastoris GS115 chromosom...    32   8.8
protein update 2009. 6. 8
PSORT 

 psg: 0.92  gvh: 0.75  alm: 0.73  top: 0.43  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 20.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for SSA225 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSA225Z
3' end seq. 
>SSA225Z.Seq
----------TCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGT
TACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCAC
TGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGGGGAA
AGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAACACAAATA
AAATATGACATATAATAAAAAATAAAAAAAAACAAAAAAAAAAAAAAAAAAAGATTAA
Length of 3' end seq. 288
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -