>SSA223 (SSA223Q) /CSM/SS/SSA2-A/SSA223Q.Seq.d/
XXXXXXXXXXAGGTTATTTCGCTCAACCAACTATTTCACCAATGTCACTGATGATATGAC
AATTTGTAAAGAAGAAATCTTTGGTCCTGTTGTCGTAATTTTAAAATTCAAAACTGTTGA
TGAAGTAATTAAAAGAGCAAATAACACAACCTATGGTTTAGCAGCTGGTATTTGGACTAA
AGATATCAGTTTAGCATTAAATGTTTCAAATAAATTAAAAGCTGGTTCAGTTTGGGTAAA
TAATTATGATAACTGTTTACCACAAGTACCATTCGGTGGTTTCAAACAATCTGGTATTGG
TCGTGATTTATCTGAATATGCAATTCAAAGCTATTTATCTGTTAAAGCTGTTACAATTGC
TCATAAAACTTTACATGCTCACCAACAACAATAAAATAAAAATAAAAATAAAATAAATTT
AAAAATAA

---LFRSTNYFTNVTDDMTICKEEIFGPVVVILKFKTVDEVIKRANNTTYGLAAGIWTKD
ISLALNVSNKLKAGSVWVNNYDNCLPQVPFGGFKQSGIGRDLSEYAIQSYLSVKAVTIAH
KTLHAHQQQ*nknknkinlki

Frame A:
---gyfaqptispmslmi*qfvkkkslvlls*f*nskllmk*lkeqitqpmv*qlvfglk
isv*h*mfqin*klvqfg*iimitvyhkyhsvvsnnlvlvviylnmqfkaiyllkllqll
iklymltnnnkikikik*i*k*


Frame B:
---vislnqlfhqch**ydnl*rrnlwsccrnfkiqnc**sn*ksk*hnlwfsswyld*r
yqfsikcfk*ikswfslgk*l**lfttstirwfqtiwyws*fi*icnsklfic*scyncs
*nftcspttik*k*k*nkfkn


Frame C:
---LFRSTNYFTNVTDDMTICKEEIFGPVVVILKFKTVDEVIKRANNTTYGLAAGIWTKD
ISLALNVSNKLKAGSVWVNNYDNCLPQVPFGGFKQSGIGRDLSEYAIQSYLSVKAVTIAH
KTLHAHQQQ*nknknkinlki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA223 (SSA223Q) /CSM/SS/SSA2-A/SSA223Q.Seq.d/                        751   0.0
VFH885 (VFH885Q) /CSM/VF/VFH8-D/VFH885Q.Seq.d/                        729   0.0
VFG803 (VFG803Q) /CSM/VF/VFG8-A/VFG803Q.Seq.d/                        729   0.0
VFE723 (VFE723Q) /CSM/VF/VFE7-A/VFE723Q.Seq.d/                        729   0.0
VFE343 (VFE343Q) /CSM/VF/VFE3-B/VFE343Q.Seq.d/                        729   0.0
SLH557 (SLH557Q) /CSM/SL/SLH5-C/SLH557Q.Seq.d/                        729   0.0
CFJ562 (CFJ562Q) /CSM/CF/CFJ5-C/CFJ562Q.Seq.d/                        729   0.0
CFE608 (CFE608Q) /CSM/CF/CFE6-A/CFE608Q.Seq.d/                        729   0.0
AFN260 (AFN260Q) /CSM/AF/AFN2-C/AFN260Q.Seq.d/                        729   0.0
AFM632 (AFM632Q) /CSM/AF/AFM6-B/AFM632Q.Seq.d/                        729   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U70317|U70317.1 Dictyostelium discoideum HydA (hydA) gene, partial cds.   353  e-148  3
BP189858|BP189858.1 Dugesia japonica cDNA, clone: 02753_HH, expressed in the head.    48  1e-08  3
Y17825|Y17825.1 Agaricus bisporus aldA and echA genes.            50  8e-06  2
AL426695|AL426695.1 clone BA0AB014E04 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    40  3e-04  2
BM058817|BM058817.1 2197-17 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2197-17, mRNA sequence.    42  8e-04  2
BU293038|BU293038.1 604165626F1 CSEQCHN55 Gallus gallus cDNA clone ChEST1024c8 5', mRNA sequence.    54  0.001  1
BU293887|BU293887.1 603577494F1 CSEQCHN55 Gallus gallus cDNA clone ChEST528k24 5', mRNA sequence.    54  0.001  1
BU124738|BU124738.1 603151781F1 CSEQCHL19 Gallus gallus cDNA clone ChEST159b22 5', mRNA sequence.    54  0.001  1
CD728554|CD728554.1 4034358 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_82A17 5', mRNA sequence.    54  0.001  1
BU125130|BU125130.1 603150027F1 CSEQCHL19 Gallus gallus cDNA clone ChEST155e8 5', mRNA sequence.    54  0.001  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70317_1(U70317|pid:none) Dictyostelium discoideum HydA (hydA) g...   214   7e-55
(Q8MI17) RecName: Full=Retinal dehydrogenase 1;          Short=R...   146   2e-34
AB176450_1(AB176450|pid:none) Oryctolagus cuniculus aldDH mRNA f...   145   6e-34
AE017194_2836(AE017194|pid:none) Bacillus cereus ATCC 10987, com...   144   9e-34
CP000903_2567(CP000903|pid:none) Bacillus weihenstephanensis KBA...   143   2e-33
CP001283_2747(CP001283|pid:none) Bacillus cereus AH820, complete...   142   5e-33
CP001407_2748(CP001407|pid:none) Bacillus cereus 03BB102, comple...   140   1e-32
CP000485_2405(CP000485|pid:none) Bacillus thuringiensis str. Al ...   140   1e-32
CP001291_3666(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...   140   2e-32
CP001287_1474(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...   139   2e-32

 psg: 0.75  gvh: 0.40  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA223 is nuc

>SSA223Z.Seq
----------AGGTTATTTCGCTCAACCAACTATTTCACCAATGTCACTGATGATATGAC
AATTTGTAAAGAAGAAATCTTTGGTCCTGTTGTCGTAATTTTAAAATTCAAAACTGTTGA
TGAAGTAATTAAAAGAGCAAATAACACAACCTATGGTTTAGCAGCTGGTATTTGGACTAA
AGATATCAGTTTAGCATTAAATGTTTCAAATAAATTAAAAGCTGGTTCAGTTTGGGTAAA
TAATTATGATAACTGTTTACCACAAGTACCATTCGGTGGTTTCAAACAATCTGGTATTGG
TCGTGATTTATCTGAATATGCAATTCAAAGCTATTTATCTGTTAAAGCTGTTACAATTGC
TCATAAAACTTTACATGCTCACCAACAACAATAAAATAAAAATAAAAATAAAATAAATTT
AAAAATAA