>SSA220 (SSA220Q) /CSM/SS/SSA2-A/SSA220Q.Seq.d/
XXXXXXXXXXCACTGTATGGGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGGAGAC
ATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAAAGAA
TTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCAATGAAGATGAATTACGTGATGCTG
TTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAAGTTA
CCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACTTGTG
CCACCAGTGGTGATGGTTTATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACAAGCT
CCTCAAAATAAATGACGTAGGAGGTCAATTTAATAGAGTTTATTAGATTTTTTAATTATT
TAATAATCTAATTAAACTACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCTTGTT
TATATAAATAATAAT

---TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAV
LLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSS
SK*mt*evnliefirffnylii*lnycclilk*kkkkpclyk**

Frame A:
---TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAV
LLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSS
SK*mt*evnliefirffnylii*lnycclilk*kkkkpclyk**


Frame B:
---lygmlvvkikfvhygdiiskilkvlsllliqtiekefkklvmnslkcsmkmnyvmlf
y*fsvtnkifqmp*vslklpin*istlsvqengtysqlvppvvmvymkv*tgsqip*qap
qnk*rrrsi**slldflii**sn*ttvv*f*nkkkknlvyinnn


Frame C:
---cmgcwwsr*nssimetlfpkysrsylcc*fkr*rknsrsl**th*naq*r*it*ccf
isfl*qtrsskchecr*syr*iksplspfkkmvhtvnlchqw*wfi*rfrlalkylnkll
kindvggqfnrvy*if*lfnnliklllfnfeikkkktlfi*ii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE692 (VSE692Q) /CSM/VS/VSE6-D/VSE692Q.Seq.d/                        890   0.0
SSM817 (SSM817Q) /CSM/SS/SSM8-A/SSM817Q.Seq.d/                        890   0.0
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                        890   0.0
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/                        890   0.0
SSL110 (SSL110Q) /CSM/SS/SSL1-A/SSL110Q.Seq.d/                        890   0.0
SSK216 (SSK216Q) /CSM/SS/SSK2-A/SSK216Q.Seq.d/                        890   0.0
SSJ475 (SSJ475Q) /CSM/SS/SSJ4-D/SSJ475Q.Seq.d/                        890   0.0
SSI674 (SSI674Q) /CSM/SS/SSI6-D/SSI674Q.Seq.d/                        890   0.0
SSI502 (SSI502Q) /CSM/SS/SSI5-A/SSI502Q.Seq.d/                        890   0.0
SSG749 (SSG749Q) /CSM/SS/SSG7-C/SSG749Q.Seq.d/                        890   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ000063|AJ000063.1 Dictyostelium discoideum mRNA for ADP-ribosylation factor 1.   890  0.0  2
CA302382|CA302382.1 taa14c04.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:ARF2_MOUSE P16500 ADP-RIBOSYLATION FACTOR 2. ;, mRNA sequence.    96  5e-29  3
AB001051|AB001051.1 Dugesia japonica mRNA for ADP-ribosylation factor, complete cds.   115  9e-29  3
BE579056|BE579056.1 kq53f10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   100  4e-28  3
BG225964|BG225964.1 kp44b08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   100  4e-28  3
BE581806|BE581806.1 kq52e12.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   100  5e-28  3
BU834567|BU834567.1 T063A04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.   101  5e-27  3
BM173409|0   103  1e-26  2
BE578347|BE578347.1 rk11h09.y1 Meloidogyne javanica Egg SL1 Topo1 Kloek Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   107  2e-26  2
CA758946|A49520 ADP-ribosylation factor 1 - fruit, mRNA sequence.   103  2e-26  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1;  &AJ000063_1(A...   248   7e-65
(P91924) RecName: Full=ADP-ribosylation factor;  &AB001051_1(AB0...   214   9e-55
AC135465_4(AC135465|pid:none) Medicago truncatula clone mth2-24h...   213   3e-54
(Q06396) RecName: Full=ADP-ribosylation factor 1; AltName: Full=...   213   3e-54
AP003570_13(AP003570|pid:none) Oryza sativa Japonica Group genom...   212   3e-54
(P51821) RecName: Full=ADP-ribosylation factor 1;  &S66337(S6633...   212   3e-54
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM...   212   3e-54
(O48649) RecName: Full=ADP-ribosylation factor 1;  &AB003377_1(A...   212   4e-54
AK226308_1(AK226308|pid:none) Arabidopsis thaliana mRNA for simi...   211   6e-54
EF144975_1(EF144975|pid:none) Populus trichocarpa clone WS0111_E...   211   6e-54

 psg: 0.75  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSA220 is nuc

>SSA220Z.Seq
----------CACTGTATGGGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGGAGAC
ATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAAAGAA
TTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCAATGAAGATGAATTACGTGATGCTG
TTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAAGTTA
CCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACTTGTG
CCACCAGTGGTGATGGTTTATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACAAGCT
CCTCAAAATAAATGACGTAGGAGGTCAATTTAATAGAGTTTATTAGATTTTTTAATTATT
TAATAATCTAATTAAACTACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCTTGTT
TATATAAATAATAAT