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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA211
Library SS
(Link to library)
Clone ID SSA211
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04335-1
Original site URL
Representative seq. ID SSA211E
(Link to Original site)
Representative DNA sequence 
>SSA211 (SSA211Q) /CSM/SS/SSA2-A/SSA211Q.Seq.d/
AAATAAATAAATAAATATCCCTTAAAAAAAAGTAAAAAATTAAAAACTTTATAAAAATAA
TGTCTCATTTAACTCCAAAACCAAACGTTTTAAATGTATATGGAGCAGGAACACCAAACT
TTGTAAAAGTTCAAATTTTATTAGAAGAAAAAAACATTCCTCANGTTTACCATAAAATTG
ATTTTTCAAAAAATGAACAATTTGATCCAGAATTTTTAAAGTTTTCACCAAATAATANAA
TTCCAGCAATTGTCGATAATACAGTTGAACCAAATGGTATTAGTGTATTTGAAAGTGCAG
CAATTTTAATGTACTTATCTGAAAAACATCAATTCNCCGNTCTTTATGCAGATTTTAAAN
CTGACCCAGCATTCCATGCCAAACCTTTAGCCTTTTATCCTCCAATTGAGTGTTGTTGGC
CCAATGCCAGGTCCATTAGGTTGGTTCCTTCGTCACCCAGAACCAAGATACTCAGCATTG
AAGCATATTCTGAAGAAGTTCGAGGGTTATATAGAGTTTTAGATAAAATACTCTCCACTA
ATACTTGGGTAGCCGGTGAACCATATAGTATTGCTGATATCAGTCTTTTAGGTTGGGCNT
TATATTTCTTAAAAGGGTATTATGATGGTCATTTCCCCAGGGAACCATTCCCCAATGTTT
ATCGTTGGTTAGGTTTAGCTGCTTAAAGGCCCGCAATCATTTAAGTTTTAGAAACAATTC
AACCAAAACAAAAATTAAAAATTAATTTTCCTTTTTTTTTTTCTTTTTTNTNTTTTNNNT
TATATATGGCAATAGGAATTAATTAAAAAAAAAAAANNANNAAAGATATTTTTAAATTTT
TTGAAA
sequence update 1999. 6.10
Translated Amino Acid sequence 
ink*islkkk*KIKNFIKIMSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPXVYHKID
FSKNEQFDPEFLKFSPNNXIPAIVDNTVEPNGISVFESAAILMYLSEKHQFXXLYADFKX
DPAFHAKPLAFYPPIECCWPNARSIRLVPSSPRTKILSIEAYSEEVRGLYRVLDKILSTN
TWVAGEPYSIADISLLGWALYFLKGYYDGHFPREPFPNVYRWLGLAA*rpaii*vletiq
pkqklkinfpfffsfxxfxlymaigin*kkkxxkdifkffe
Translated Amino Acid sequence (All Frames) 
Frame A:
k*inkyplkkskklktl*k*cli*lqnqtf*mymeqehqtl*kfkfy*kkktflxftikl
ifqkmnnliqnf*sfhqiixfqqlsiiqlnqmvlvylkvqqf*ctylkninspxfmqilx
ltqhsmpnl*pfilqlsvvgpmpgplgwflrhpeprysalkhilkkfegyief*ikyspl
ilg*pvnhivllisvf*vgxyis*kgimmvispgnhspmfivg*v*llkgpqsfkf*kqf
nqnkn*kliflffflfxxxxyiwq*elikkkkxxkiflnflk


Frame B:
nk*inip*kkvkn*klyknnvsfnsktkrfkciwsrntklckssnfirrkkhssxlp*n*
ffkk*ti*srifkvftk*xnssncr*ys*tkwy*ci*kcsnfnvli*ktsixrslcrf*x
*psipcqtfsllssn*vllaqcqvh*vgsfvtqnqdtqh*sif*rssrvi*sfr*ntlh*
ylgsr*ti*yc*yqsfrlgxiflkrvl*wsfpqgtipqclslvrfsclkarnhlsfrnns
tktkikn*fsffffffxfxxiygnrn*lkkkxxxryf*if*


Frame C:
ink*islkkk*KIKNFIKIMSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPXVYHKID
FSKNEQFDPEFLKFSPNNXIPAIVDNTVEPNGISVFESAAILMYLSEKHQFXXLYADFKX
DPAFHAKPLAFYPPIECCWPNARSIRLVPSSPRTKILSIEAYSEEVRGLYRVLDKILSTN
TWVAGEPYSIADISLLGWALYFLKGYYDGHFPREPFPNVYRWLGLAA*rpaii*vletiq
pkqklkinfpfffsfxxfxlymaigin*kkkxxkdifkffe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA211 (SSA211Q) /CSM/SS/SSA2-A/SSA211Q.Seq.d/                       1287   0.0
SSE202 (SSE202Q) /CSM/SS/SSE2-A/SSE202Q.Seq.d/                        704   0.0
SSL657 (SSL657Q) /CSM/SS/SSL6-C/SSL657Q.Seq.d/                        595   e-169
VSJ886 (VSJ886Q) /CSM/VS/VSJ8-D/VSJ886Q.Seq.d/                        575   e-163
SSJ148 (SSJ148Q) /CSM/SS/SSJ1-B/SSJ148Q.Seq.d/                        394   e-109
SSH471 (SSH471Q) /CSM/SS/SSH4-C/SSH471Q.Seq.d/                         38   0.21
SSC282 (SSC282Q) /CSM/SS/SSC2-D/SSC282Q.Seq.d/                         38   0.21
SSB173 (SSB173Q) /CSM/SS/SSB1-D/SSB173Q.Seq.d/                         38   0.21
SFJ124 (SFJ124Q) /CSM/SF/SFJ1-A/SFJ124Q.Seq.d/                         38   0.21
CHB486 (CHB486Q) /CSM/CH/CHB4-D/CHB486Q.Seq.d/                         38   0.21
own update 2003. 6.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.   361  0.0  7
AX345287|AX345287.1 Sequence 358 from Patent WO0200928.           34  0.035  4
AL615968|AL615968.1 T7 end of clone 013BE10 of library SmBAC1 from strain Puerto-Rican  of Schistosoma mansoni.    50  0.044  1
BH179012|BH179012.1 013_I_20-21 SmBAC1 Schistosoma mansoni genomic clone 013I20 5', DNA sequence.    50  0.044  1
AC100790|AC100790.2 Homo sapiens chromosome 17 clone RP11-114I3 map 17, LOW-PASS SEQUENCE SAMPLING.    42  0.10  3
CC185005|CC185005.1 CH261-61I11 CH261 Gallus gallus genomic clone CH261-61I11, DNA sequence.    36  0.17  3
AF035826|AF035826.1 Archaeoglobus fulgidus chaperonin beta subunit gene, complete cds.    48  0.18  1
AE001003|AE001003.1 Archaeoglobus fulgidus section 104 of 172 of the complete genome.    48  0.19  2
AX458606|AX458606.1 Sequence 152 from Patent WO0246454.           40  0.22  3
AC024810|AC024810.1 Caenorhabditis elegans clone Y54E10A, complete sequence.    34  0.52  5
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX950851_3019(BX950851|pid:none) Erwinia carotovora subsp. atros...   120   4e-26
AM942759_1763(AM942759|pid:none) Proteus mirabilis strain HI4320...   112   2e-23
CP000151_2367(CP000151|pid:none) Burkholderia sp. 383 chromosome...   110   8e-23
CP000378_1605(CP000378|pid:none) Burkholderia cenocepacia AU 105...   109   1e-22
CP000440_2258(CP000440|pid:none) Burkholderia ambifaria AMMD chr...   108   2e-22
CP001025_2121(CP001025|pid:none) Burkholderia ambifaria MC40-6 c...   108   2e-22
CP000699_3430(CP000699|pid:none) Sphingomonas wittichii RW1, com...   108   3e-22
CP000614_2284(CP000614|pid:none) Burkholderia vietnamiensis G4 c...   107   4e-22
BA000012_3811(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...   107   4e-22
AM747720_2319(AM747720|pid:none) Burkholderia cenocepacia J2315 ...   107   5e-22
protein update 2009. 7. 5
PSORT 

 psg: 0.74  gvh: 0.25  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSA211 is nuc
5' end seq. ID SSA211F
5' end seq. 
>SSA211F.Seq
AAATAAATAAATAAATATCCCTTAAAAAAAAGTAAAAAATTAAAAACTTTATAAAAATAA
TGTCTCATTTAACTCCAAAACCAAACGTTTTAAATGTATATGGAGCAGGAACACCAAACT
TTGTAAAAGTTCAAATTTTATTAGAAGAAAAAAACATTCCTCANGTTTACCATAAAATTG
ATTTTTCAAAAAATGAACAATTTGATCCAGAATTTTTAAAGTTTTCACCAAATAATANAA
TTCCAGCAATTGTCGATAATACAGTTGAACCAAATGGTATTAGTGTATTTGAAAGTGCAG
CAATTTTAATGTACTTATCTGAAAAACATCAATTCACCGATCTTTATGCAGATTTTAAAA
CTGACCCAG----------
Length of 5' end seq. 369
3' end seq. ID SSA211Z
3' end seq. 
>SSA211Z.Seq
----------TCCCGCTCTTATGCAGTTTTAAACCTGACCCAGCATTCCATGCCAAACCT
TTAGCCTTTTATCCTCCAATTGAGTGTTGTTGGCCCAATGCCAGGTCCATTAGGTTGGTT
CCTTCGTCACCCAGAACCAAGATACTCAGCATTGAAGCATATTCTGAAGAAGTTCGAGGG
TTATATAGAGTTTTAGATAAAATACTCTCCACTAATACTTGGGTAGCCGGTGAACCATAT
AGTATTGCTGATATCAGTCTTTTAGGTTGGGCNTTATATTTCTTAAAAGGGTATTATGAT
GGTCATTTCCCCAGGGAACCATTCCCCAATGTTTATCGTTGGTTAGGTTTAGCTGCTTAA
AGGCCCGCAATCATTTAAGTTTTAGAAACAATTCAACCAAAACAAAAATTAAAAATTAAT
TTTCCTTTTTTTTTTTCTTTTTTNTNTTTTNNNTTATATATGGCAATAGGAATTAATTAA
AAAAAAAAAANNANNAAAGATATTTTTAAATTTTTTGAAA
Length of 3' end seq. 510
Connected seq. ID SSA211P
Connected seq. 
>SSA211P.Seq
AAATAAATAAATAAATATCCCTTAAAAAAAAGTAAAAAATTAAAAACTTTATAAAAATAA
TGTCTCATTTAACTCCAAAACCAAACGTTTTAAATGTATATGGAGCAGGAACACCAAACT
TTGTAAAAGTTCAAATTTTATTAGAAGAAAAAAACATTCCTCANGTTTACCATAAAATTG
ATTTTTCAAAAAATGAACAATTTGATCCAGAATTTTTAAAGTTTTCACCAAATAATANAA
TTCCAGCAATTGTCGATAATACAGTTGAACCAAATGGTATTAGTGTATTTGAAAGTGCAG
CAATTTTAATGTACTTATCTGAAAAACATCAATTCACCGATCTTTATGCAGATTTTAAAA
CTGACCCAG----------TCCCGCTCTTATGCAGTTTTAAACCTGACCCAGCATTCCAT
GCCAAACCTTTAGCCTTTTATCCTCCAATTGAGTGTTGTTGGCCCAATGCCAGGTCCATT
AGGTTGGTTCCTTCGTCACCCAGAACCAAGATACTCAGCATTGAAGCATATTCTGAAGAA
GTTCGAGGGTTATATAGAGTTTTAGATAAAATACTCTCCACTAATACTTGGGTAGCCGGT
GAACCATATAGTATTGCTGATATCAGTCTTTTAGGTTGGGCNTTATATTTCTTAAAAGGG
TATTATGATGGTCATTTCCCCAGGGAACCATTCCCCAATGTTTATCGTTGGTTAGGTTTA
GCTGCTTAAAGGCCCGCAATCATTTAAGTTTTAGAAACAATTCAACCAAAACAAAAATTA
AAAATTAATTTTCCTTTTTTTTTTTCTTTTTTNTNTTTTNNNTTATATATGGCAATAGGA
ATTAATTAAAAAAAAAAAANNANNAAAGATATTTTTAAATTTTTTGAAA
Length of connected seq. 879
Full length Seq ID SSA211E
Full length Seq. 
>SSA211E.Seq
AAATAAATAAATAAATATCCCTTAAAAAAAAGTAAAAAATTAAAAACTTTATAAAAATAA
TGTCTCATTTAACTCCAAAACCAAACGTTTTAAATGTATATGGAGCAGGAACACCAAACT
TTGTAAAAGTTCAAATTTTATTAGAAGAAAAAAACATTCCTCANGTTTACCATAAAATTG
ATTTTTCAAAAAATGAACAATTTGATCCAGAATTTTTAAAGTTTTCACCAAATAATANAA
TTCCAGCAATTGTCGATAATACAGTTGAACCAAATGGTATTAGTGTATTTGAAAGTGCAG
CAATTTTAATGTACTTATCTGAAAAACATCAATTCNCCGNTCTTTATGCAGATTTTAAAN
CTGACCCAGCATTCCATGCCAAACCTTTAGCCTTTTATCCTCCAATTGAGTGTTGTTGGC
CCAATGCCAGGTCCATTAGGTTGGTTCCTTCGTCACCCAGAACCAAGATACTCAGCATTG
AAGCATATTCTGAAGAAGTTCGAGGGTTATATAGAGTTTTAGATAAAATACTCTCCACTA
ATACTTGGGTAGCCGGTGAACCATATAGTATTGCTGATATCAGTCTTTTAGGTTGGGCNT
TATATTTCTTAAAAGGGTATTATGATGGTCATTTCCCCAGGGAACCATTCCCCAATGTTT
ATCGTTGGTTAGGTTTAGCTGCTTAAAGGCCCGCAATCATTTAAGTTTTAGAAACAATTC
AACCAAAACAAAAATTAAAAATTAATTTTCCTTTTTTTTTTTCTTTTTTNTNTTTTNNNT
TATATATGGCAATAGGAATTAATTAAAAAAAAAAAANNANNAAAGATATTTTTAAATTTT
TTGAAA
Length of full length seq. 846