>SSA210 (SSA210Q) /CSM/SS/SSA2-A/SSA210Q.Seq.d/
CAAAAAAAAAAAAGTAAAACAATAAATTATATAAAAAAAATAAAAAAAATGTCAATCATT
AATACTATTTCAAAATTAAGTTTATCAAATTCATTAAAATCAAATXXXXXXXXXX

QKKKSKTINYIKKIKKMSIINTISKLSLSNSLKS---

Frame A:
QKKKSKTINYIKKIKKMSIINTISKLSLSNSLKS---


Frame B:
kkkkvkq*ii*kk*kkcqslilfqn*vyqih*nq---


Frame C:
kkkk*nnklykknkknvnh*yyfkikfikfikik---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSE780 (SSE780Q) /CSM/SS/SSE7-D/SSE780Q.Seq.d/                        111   2e-24
SSB524 (SSB524Q) /CSM/SS/SSB5-A/SSB524Q.Seq.d/                        111   2e-24
SSA210 (SSA210Q) /CSM/SS/SSA2-A/SSA210Q.Seq.d/                        111   2e-24
VHK389 (VHK389Q) /CSM/VH/VHK3-D/VHK389Q.Seq.d/                         34   0.39
VHI511 (VHI511Q) /CSM/VH/VHI5-A/VHI511Q.Seq.d/                         34   0.39
VFN388 (VFN388Q) /CSM/VF/VFN3-D/VFN388Q.Seq.d/                         34   0.39
SSM459 (SSM459Q) /CSM/SS/SSM4-C/SSM459Q.Seq.d/                         34   0.39
SSJ155 (SSJ155Q) /CSM/SS/SSJ1-C/SSJ155Q.Seq.d/                         34   0.39
SSI171 (SSI171Q) /CSM/SS/SSI1-C/SSI171Q.Seq.d/                         34   0.39
SFD314 (SFD314Q) /CSM/SF/SFD3-A/SFD314Q.Seq.d/                         34   0.39

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA854774|CA854774.1 PfESToac13e11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:Y412_ARATH O04658 HYPOTHETICAL 47.9 KD PROTEIN M021B04.12. ;, mRNA sequence.    46  0.079  1
AC115227|AC115227.5 Rattus norvegicus clone CH230-43L8, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  0.31  1
BZ525481|BZ525481.1 OGAGR95TC ZM2_0.7_1.5_KB Zea mays genomic clone ZMMBMa0057O22, DNA sequence.    44  0.31  1
BX220367|BX220367.1 Danio rerio genomic clone DKEY-47N11, genomic survey sequence.    44  0.31  1
AJ303601|AJ303601.1 Plasmodium chabaudi genome survey sequence, clone PC1f8.s1t.    42  1.2  1
AZ681975|AZ681975.1 ENTME89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1.2  1
BZ387906|BZ387906.1 EINAW83TR EI_10_12_KB Entamoeba invadens genomic clone EINAW83, DNA sequence.    42  1.2  1
BH137167|BH137167.1 ENTOW24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1.2  1
AZ674823|AZ674823.1 ENTFX40TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1.2  1
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    46  2.6  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 26,330,675

 psg: 0.62  gvh: 0.46  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SSA210 is mit

>SSA210F.Seq
CAAAAAAAAAAAAGTAAAACAATAAATTATATAAAAAAAATAAAAAAAATGTCAATCATT
AATACTATTTCAAAATTAAGTTTATCAAATTCATTAAAATCAAAT----------