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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA204
Library SS
(Link to library)
Clone ID SSA204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14136-1
Original site URL
Representative seq. ID SSA204F
(Link to Original site)
Representative DNA sequence 
>SSA204 (SSA204Q) /CSM/SS/SSA2-A/SSA204Q.Seq.d/
AAAATATCAAAAGCAACAATAAAATCTACATTATAAAAATGACAATATTAAAATCGATTA
CTAGTTTTACATTTAATATTAAAAATAATAATAATAATAATAAAATAAATAATATAAATG
TTAAAAATAATTTTTCAAATAATATAATATCAGAATCTTCAACATTGGTACATTTTAAAC
TATGGAGAGGTGGTACATGGCTTGATATTGCAATGGATGATAGAGTTTCCATATATACAC
TTTGTTAAATTTTTAATAATAATATTATTATATATATXXXXXXXXXX
sequence update 1999. 3. 8
Translated Amino Acid sequence 
NIKSNNKIYIIKMTILKSITSFTFNIKNNNNNNKINNINVKNNFSNNIISESSTLVHFKL
WRGGTWLDIAMDDRVSIYTLC*ifnnniiiy---
Translated Amino Acid sequence (All Frames) 
Frame A:
kiskatikstl*k*qy*nrllvlhlilkiiiiiik*ii*mlkiifqii*yqnlqhwyiln
ygevvhglilqwmiefpyihfvkfliiillyi---


Frame B:
kyqkqq*nlhykndnikidy*fyi*y*k******nk*ykc*k*ffk*ynirifnigtf*t
merwyma*ycng**sfhiytllnf***yyyi---


Frame C:
NIKSNNKIYIIKMTILKSITSFTFNIKNNNNNNKINNINVKNNFSNNIISESSTLVHFKL
WRGGTWLDIAMDDRVSIYTLC*ifnnniiiy---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA484 (SSA484Q) /CSM/SS/SSA4-D/SSA484Q.Seq.d/                        254   6e-67
SSA204 (SSA204Q) /CSM/SS/SSA2-A/SSA204Q.Seq.d/                        254   6e-67
CHF183 (CHF183Q) /CSM/CH/CHF1-D/CHF183Q.Seq.d/                        254   6e-67
AHN759 (AHN759Q) /CSM/AH/AHN7-C/AHN759Q.Seq.d/                        254   6e-67
VSK395 (VSK395Q) /CSM/VS/VSK3-D/VSK395Q.Seq.d/                         46   3e-04
AHK227 (AHK227Q) /CSM/AH/AHK2-B/AHK227Q.Seq.d/                         46   3e-04
VSF717 (VSF717Q) /CSM/VS/VSF7-A/VSF717Q.Seq.d/                         42   0.004
VSI282 (VSI282Q) /CSM/VS/VSI2-D/VSI282Q.Seq.d/                         40   0.018
VFE349 (VFE349Q) /CSM/VF/VFE3-C/VFE349Q.Seq.d/                         40   0.018
SSJ194 (SSJ194Q) /CSM/SS/SSJ1-D/SSJ194Q.Seq.d/                         40   0.018
own update 2004. 7.28
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  1e-05  5
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    40  0.002  5
AX348496|AX348496.1 Sequence 4 from Patent WO0202809.             42  0.004  2
AX344975|AX344975.1 Sequence 46 from Patent WO0200928.            42  0.004  2
X92982|X92982.1 C.difficile cdu2, cdu1, tcdD, tcdB, tcdE, tcdA, tcdC, cdd1, cdd2,  cdd3, and cdd4 genes.    48  0.014  2
CB208406|CB208406.1 AGENCOURT_11375245 NICHD_XGC_Tad1 Xenopus laevis cDNA clone IMAGE:6881228 5', mRNA sequence.    50  0.014  1
AL954852|AL954852.3 Oryza sativa chromosome 12, ***SEQUENCING IN PROGRESS***. BAC  OJ1573_A06 of library Monsanto from chromosome 12 of cultivar  Nipponbare of ssp. japonica of Oryza sativa (rice).    46  0.022  3
AJ333293|AJ333293.1 Homo sapiens genomic sequence surrounding NotI site, clone  NL6-EM8RS.    44  0.025  2
BZ076738|BZ076738.1 lkf74b11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  0.027  2
X95275|X95275.1 P.falciparum complete gene map of plastid-like DNA (IR-A).    42  0.031  2
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL954831_9(AL954831|pid:none) Zebrafish DNA sequence from clone ...    35   0.80
BT058958_1(BT058958|pid:none) Salmo salar clone ssal-rgf-516-040...    34   1.8
(Q6ZSI9) RecName: Full=Calpain-12;          EC=3.4.22.-;  &AK127...    34   1.8
AL132848_2(AL132848|pid:none) Caenorhabditis elegans YAC Y47H10A...    34   1.8
(Q9VT65) RecName: Full=Calpain-B;          EC=3.4.22.-; AltName:...    33   2.3
A55054(A55054) calpain (EC 3.4.22.17) large chain - fruit fly (D...    33   2.3
X78555_1(X78555|pid:none) D.melanogaster mRNA for calpain.             33   2.3
AF062404_1(AF062404|pid:none) Drosophila melanogaster calpain mR...    33   2.3
Z46891_1(Z46891|pid:none) D.melanogaster mRNA for Calpain.             33   2.3
BC042349_1(BC042349|pid:none) Xenopus laevis calpain 8, mRNA (cD...    33   3.0
protein update 2009. 6. 7
PSORT 

 psg: 0.83  gvh: 0.38  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSA204 is mit
5' end seq. ID SSA204F
5' end seq. 
>SSA204F.Seq
AAAATATCAAAAGCAACAATAAAATCTACATTATAAAAATGACAATATTAAAATCGATTA
CTAGTTTTACATTTAATATTAAAAATAATAATAATAATAATAAAATAAATAATATAAATG
TTAAAAATAATTTTTCAAATAATATAATATCAGAATCTTCAACATTGGTACATTTTAAAC
TATGGAGAGGTGGTACATGGCTTGATATTGCAATGGATGATAGAGTTTCCATATATACAC
TTTGTTAAATTTTTAATAATAATATTATTATATATAT----------
Length of 5' end seq. 277
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -