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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA191
Library SS
(Link to library)
Clone ID SSA191
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16278-1
Original site URL
Representative seq. ID SSA191E
(Link to Original site)
Representative DNA sequence 
>SSA191 (SSA191Q) /CSM/SS/SSA1-D/SSA191Q.Seq.d/
CTTCTTTCTATTTAAATAAAACTTGTATTATTATAAAAAATAAAAATAAAAAAAAAAAAA
AGAACAATGGGTCTCGCTTTTGGTAAACTTTTCAGCCGTTTCTTTGGCAAAAAAGATATG
AGAATTTTAATGGTCGGTTTAGATGCTGCTGGTAAAACCACCATTTTATACAAACTTAAA
TTAGGTGAAATTGTTACTACAATTCCAACCATTGGTTTCAATGTCGAAACTGTCGAATTC
AAAAACATTAACTTCACTGTATGGGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGG
AGACATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAA
AGAATTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCAATGAAGATGAATTACGTGAT
GCTGTTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAA
GTTACCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACT
TGTGCCACCAGTGGTGATGGTTTATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACA
AGCTCCTCAAAATAAATGACGTAGGAGGTCAATTTAATAGAGTTTATTAGATTTTTTAAT
TATTTAATAATCTAATTAAACTACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCT
TGTTTATATAAATAATAATAAAT
sequence update 1997. 6.24
Translated Amino Acid sequence 
llsi*iklvll*KIKIKKKKRTMGLAFGKLFSRFFGKKDMRILMVGLDAAGKTTILYKLK
LGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE
RIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQST
CATSGDGLYEGLDWLSNTLTSSSK*mt*evnliefirffnylii*lnycclilk*kkkkp
clyk***
Translated Amino Acid sequence (All Frames) 
Frame A:
llsi*iklvll*KIKIKKKKRTMGLAFGKLFSRFFGKKDMRILMVGLDAAGKTTILYKLK
LGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE
RIQEACDELTKMLNEDELRDAVLLVFCNKQDLPNAMSVAEVTDKLNLHSLRSRKWYIQST
CATSGDGLYEGLDWLSNTLTSSSK*mt*evnliefirffnylii*lnycclilk*kkkkp
clyk***


Frame B:
fflfk*nlyyykk*k*kkkkeqwvsllvnfsavslakki*ef*wsv*mllvkppfytnln
*vklllqfqplvsmsklsnsktltslygmlvvkikfvhygdiiskilkvlsllliqtiek
efkklvmnslkcsmkmnyvmlfy*fsvtnkifqmp*vslklpin*istlsvqengtysql
vppvvmvymkv*tgsqip*qapqnk*rrrsi**slldflii**sn*ttvv*f*nkkkknl
vyinnnk


Frame C:
sfylnktciiiknknkkkkknngsrfw*tfqpflwqkryenfngrfrccw*nhhfiqt*i
r*ncyynsnhwfqcrncriqkh*lhcmgcwwsr*nssimetlfpkysrsylcc*fkr*rk
nsrsl**th*naq*r*it*ccfisfl*qtrsskchecr*syr*iksplspfkkmvhtvnl
chqw*wfi*rfrlalkylnkllkindvggqfnrvy*if*lfnnliklllfnfeikkkktl
fi*iiin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSC884 (SSC884Q) /CSM/SS/SSC8-D/SSC884Q.Seq.d/                       1273   0.0
SSA191 (SSA191Q) /CSM/SS/SSA1-D/SSA191Q.Seq.d/                       1273   0.0
SSC323 (SSC323Q) /CSM/SS/SSC3-A/SSC323Q.Seq.d/                       1269   0.0
SLE250 (SLE250Q) /CSM/SL/SLE2-C/SLE250Q.Seq.d/                       1267   0.0
SSK773 (SSK773Q) /CSM/SS/SSK7-D/SSK773Q.Seq.d/                       1265   0.0
SSF795 (SSF795Q) /CSM/SS/SSF7-D/SSF795Q.Seq.d/                       1265   0.0
SSC436 (SSC436Q) /CSM/SS/SSC4-B/SSC436Q.Seq.d/                       1261   0.0
SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                       1259   0.0
SSJ855 (SSJ855Q) /CSM/SS/SSJ8-C/SSJ855Q.Seq.d/                       1259   0.0
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/                       1257   0.0
own update 2001. 8.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AJ000063|AJ000063.1 Dictyostelium discoideum mRNA for ADP-ribosylation factor 1.  1273  0.0  3
CD524199|CD524199.1 ku97c01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   210  4e-55  2
AI187662|AI187662.1 EST485 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaD225 5' similar to ADP-ribosylation factor 1, mRNA sequence.   224  1e-54  1
BI073736|BI073736.1 kt34c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:ARF1_CAEEL Q10943 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   210  5e-54  2
CD525279|CD525279.1 kw14d01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   194  2e-50  2
AB001051|AB001051.1 Dugesia japonica mRNA for ADP-ribosylation factor, complete cds.   170  5e-50  4
BG225964|BG225964.1 kp44b08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   174  7e-50  3
CA302382|CA302382.1 taa14c04.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:ARF2_MOUSE P16500 ADP-RIBOSYLATION FACTOR 2. ;, mRNA sequence.   163  2e-48  3
BQ624303|BQ624303.1 USDA-FP_01394 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01394 5', mRNA sequence.   165  8e-44  2
AI727428|0   168  1e-42  2
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1;  &AJ000063_1(A...   370   e-101
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM...   324   2e-87
(P36397) RecName: Full=ADP-ribosylation factor 1;          Short...   323   3e-87
AF108891_1(AF108891|pid:none) Capsicum annuum ADP-ribosylation f...   322   8e-87
DQ191654_1(DQ191654|pid:none) Solanum tuberosum ARF-like small G...   322   1e-86
AC135465_4(AC135465|pid:none) Medicago truncatula clone mth2-24h...   321   1e-86
AF372902_1(AF372902|pid:none) Arabidopsis thaliana AT3g62290/T17...   321   2e-86
AK226308_1(AK226308|pid:none) Arabidopsis thaliana mRNA for simi...   321   2e-86
(Q06396) RecName: Full=ADP-ribosylation factor 1; AltName: Full=...   321   2e-86
AC009398_7(AC009398|pid:none) Genomic sequence for Arabidopsis t...   320   2e-86
protein update 2009. 7. 5
PSORT 

 psg: 0.82  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for SSA191 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA191E
Full length Seq. 
>SSA191E.Seq
CTTCTTTCTATTTAAATAAAACTTGTATTATTATAAAAAATAAAAATAAAAAAAAAAAAA
AGAACAATGGGTCTCGCTTTTGGTAAACTTTTCAGCCGTTTCTTTGGCAAAAAAGATATG
AGAATTTTAATGGTCGGTTTAGATGCTGCTGGTAAAACCACCATTTTATACAAACTTAAA
TTAGGTGAAATTGTTACTACAATTCCAACCATTGGTTTCAATGTCGAAACTGTCGAATTC
AAAAACATTAACTTCACTGTATGGGATGTTGGTGGTCAAGATAAAATTCGTCCATTATGG
AGACATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTGTTGATTCAAACGATAGAGAA
AGAATTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCAATGAAGATGAATTACGTGAT
GCTGTTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAAATGCCATGAGTGTCGCTGAA
GTTACCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAAAATGGTACATACAGTCAACT
TGTGCCACCAGTGGTGATGGTTTATATGAAGGTTTAGACTGGCTCTCAAATACCTTAACA
AGCTCCTCAAAATAAATGACGTAGGAGGTCAATTTAATAGAGTTTATTAGATTTTTTAAT
TATTTAATAATCTAATTAAACTACTGTTGTTTAATTTTGAAATAAAAAAAAAAAAAACCT
TGTTTATATAAATAATAATAAAT
Length of full length seq. 743