>SSA188 (SSA188Q) /CSM/SS/SSA1-D/SSA188Q.Seq.d/
GGACAAAATTAAAACTAATCAAATTATCACTTAGTTTAATAGTAATATAAATAAATTAAA
ACCAAAAAATTCCCAATTATTTCATATAAATATCAATAAAATGTCAGAAGATCAAGGTTC
AGGAGCAACAAGAGTTAAATTAGTAGTTGTCGGTGATGGTGCTGTTGGTAAAACATGTCT
TTTAATTTGTTATGCACAAAATGATTTTCCAGTAGATTATGTACCAACTGTTTTTGAAAA
TTATACAGCAACCAGAAAGAGAGGAAATGAAGATATTAAAGTACATTTATGGGATACTGC
AGGCCAAGAAGAATATGATCGTTTACGTCCATTATCATACCCAGGCGCTGATGTTGTTCT
CCTTTGTTTCAGCACAATCAGTCAATCATCATATGAAGCCATTAGAGATAAATGGGCACC
AGAAGTTAATCACTATATCCCAGATGTACCATCAATTTTAGTTGGTACTAAAATCGATTT
ACGTGAACAACAACACCCAGATCCAAACTCTGGTAAATTCGAACCAATCACTGCCGATAT
GGGTATTTCAATGGCGAAAACCAAATTAAAGGCCCAAGGAAAATATTTAAGAAGTCCTCC
TGGCAAAAGACCTCCGTCCAAGGGTTTAGGAAAGAAGGTTTTCCGGAXXXXXXXXXX

dkiktnqiit*FNSNINKLKPKNSQLFHININKMSEDQGSGATRVKLVVVGDGAVGKTCL
LICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVL
LCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADM
GISMAKTKLKAQGKYLRSPPGKRPPSKGLGKKVFR---

Frame A:
gqn*n*snyhlv***yk*iktkkfpiisykyq*nvrrsrfrsnks*isscr*wccw*nms
fnllctk*fssrlctncf*klysnqkerk*ry*stfmgycrprri*sftsiiiprr*ccs
plfqhnqsiii*sh*r*mgtrs*slyprctinfswy*nrft*tttprsklw*irtnhcry
gyfngenqikgprkifkksswqktsvqgfrkegfp---


Frame B:
dkiktnqiit*FNSNINKLKPKNSQLFHININKMSEDQGSGATRVKLVVVGDGAVGKTCL
LICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVL
LCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADM
GISMAKTKLKAQGKYLRSPPGKRPPSKGLGKKVFR---


Frame C:
tklkliklslslivi*in*nqkipnyfi*isikcqkikvqeqqeln**lsvmvllvkhvf
*fvmhkmifq*imyqlflkiiqqpereemkilkyiygilqakknmivyvhyhtqalmlfs
fvsaqsvnhhmkpleinghqklitisqmyhqf*lvlksiyvnnntqiqtlvnsnqslpiw
vfqwrkpn*rpkeni*evllakdlrprv*errfs---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA188 (SSA188Q) /CSM/SS/SSA1-D/SSA188Q.Seq.d/                       1283   0.0
CHQ814 (CHQ814Q) /CSM/CH/CHQ8-A/CHQ814Q.Seq.d/                       1088   0.0
SSL439 (SSL439Q) /CSM/SS/SSL4-B/SSL439Q.Seq.d/                       1082   0.0
VFJ557 (VFJ557Q) /CSM/VF/VFJ5-C/VFJ557Q.Seq.d/                       1068   0.0
SSF777 (SSF777Q) /CSM/SS/SSF7-D/SSF777Q.Seq.d/                        971   0.0
VSJ831 (VSJ831Q) /CSM/VS/VSJ8-B/VSJ831Q.Seq.d/                        902   0.0
VSI786 (VSI786Q) /CSM/VS/VSI7-D/VSI786Q.Seq.d/                        817   0.0
SSG623 (SSG623Q) /CSM/SS/SSG6-A/SSG623Q.Seq.d/                        795   0.0
SSC347 (SSC347Q) /CSM/SS/SSC3-B/SSC347Q.Seq.d/                        728   0.0
SSI693 (SSI693Q) /CSM/SS/SSI6-D/SSI693Q.Seq.d/                        724   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U41222|U41222.1 Dictyostelium discoideum RacE (racE) gene, complete cds.   319  0.0  5
AF310890|AF310890.1 Dictyostelium discoideum PcmA (pcmA) and RacE (racE) genes, complete cds; tRNA-Phe gene, complete sequence; and unknown gene.   319  0.0  5
L11589|L11589.1 Slime mold Rac1B protein mRNA, complete cds.      76  2e-27  3
AF310884|AF310884.1 Dictyostelium discoideum Rac1B (rac1B) gene, complete cds; racK pseudogene, complete sequence; and unknown genes.    76  5e-26  3
L11588|L11588.1 Dictyostelium discoideum rac1A protein mRNA, complete cds.    70  4e-25  3
AF309947|AF309947.1 Dictyostelium discoideum Rac1A (rac1A) gene, complete cds; and unknown gene.    70  5e-25  4
AF153328|AF153328.1 Dictyostelium discoideum Rac1C (rac1C) mRNA, complete cds.    78  7e-23  3
AF310885|AF310885.1 Dictyostelium discoideum Rac1C (rac1C) gene, complete cds; and unknown gene.    78  2e-21  3
L11594|L11594.1 Slime mold RacD protein mRNA, complete cds.       70  5e-20  4
AF037042|AF037042.2 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene, complete cds; tRNA-Glu gene, complete sequence; and unknown genes.    68  1e-19  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23862) RecName: Full=Rho-related protein racE; Flags: Precurso...   317   2e-85
CS026603_1(CS026603|pid:none) Sequence 155 from Patent WO2005014...   204   2e-51
AB074145_1(AB074145|pid:none) Synthetic construct gene for Raich...   174   2e-42
CS560334_1(CS560334|pid:none) Sequence 921 from Patent WO2006032...   170   3e-41
GN079997_1(GN079997|pid:none) Sequence 600 from Patent WO2009027...   170   3e-41
DQ081716_1(DQ081716|pid:none) Paracoccidioides brasiliensis Rac1...   170   4e-41
AY190720_1(AY190720|pid:none) Pagrus major ras-related C3 botuli...   170   4e-41
BT046927_1(BT046927|pid:none) Salmo salar clone ssal-evf-537-294...   170   4e-41
AY282417_1(AY282417|pid:none) Aplysia californica Rac mRNA, comp...   169   5e-41
(Q67VP4) RecName: Full=Rac-like GTP-binding protein 4; AltName: ...   169   6e-41

 psg: 0.77  gvh: 0.44  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSA188 is nuc

>SSA188F.Seq
GGACAAAATTAAAACTAATCAAATTATCACTTAGTTTAATAGTAATATAAATAAATTAAA
ACCAAAAAATTCCCAATTATTTCATATAAATATCAATAAAATGTCAGAAGATCAAGGTTC
AGGAGCAACAAGAGTTAAATTAGTAGTTGTCGGTGATGGTGCTGTTGGTAAAACATGTCT
TTTAATTTGTTATGCACAAAATGATTTTCCAGTAGATTATGTACCAACTGTTTTTGAAAA
TTATACAGCAACCAGAAAGAGAGGAAATGAAGATATTAAAGTACATTTATGGGATACTGC
AGGCCAAGAAGAATATGATCGTTTACGTCCATTATCATACCCAGGCGCTGATGTTGTTCT
CCTTTGTTTCAGCACAATCAGTCAATCATCATATGAAGCCATTAGAGATAAATGGGCACC
AGAAGTTAATCACTATATCCCAGATGTACCATCAATTTTAGTTGGTACTAAAATCGATTT
ACGTGAACAACAACACCCAGATCCAAACTCTGGTAAATTCGAACCAATCACTGCCGATAT
GGGTATTTCAATGGCGAAAACCAAATTAAAGGCCCAAGGAAAATATTTAAGAAGTCCTCC
TGGCAAAAGACCTCCGTCCAAGGGTTTAGGAAAGAAGGTTTTCCGGA----------