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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA184
Library SS
(Link to library)
Clone ID SSA184
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15932-1
Original site URL
Representative seq. ID SSA184P
(Link to Original site)
Representative DNA sequence 
>SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/
AGTTGTTTAACACCAAAAGTTCATACAAGTGTTTATGGTATTCCAACAACTGGTACTGAT
CAAACTCAAATTGAAAATTTACTTTCAAATCTTGGTTCACAAAATTGGATAAATGAAATT
GTTCAAAATTCACTTTCAAATATTTTTAAACCAAATGTAAATAATAATAATCAAAATCAA
AATCAATCAACAACAACAAATAATAATAATACTACAACAACAACAACTACATCAACAACA
AAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAAAATATGGTTGAACATGTTGGAATT
ACATGTGATGGTTGTGATTCAAAAGTATTTGGTAATCGTTATAAATGTACAGTTTGTCAT
GATTATGATTTATGTTCAGAATGTGAATCACGTGGAGACCAAGTTCATCCAACTTCTCAT
CCATTATTGAAAATCGCACAACCAACTCCAATTTCATGTTCATGGCAACATAGTAACGCT
GGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGTAGATGTACTAGAAAAGTTTATGCA
GCTCGTTATTTAGCTGATATTTCAATTAAAAGATGGTAGTGTCATTCCAAAGGGTTCCTC
CTTTACCAAGACTTGGAGATTTACGTAATGATGGTAAAACCTCTTGGCCAGAAAATACAA
ACTCTCTCTTTCCTCTCTGGTGATAGATTCCCAATATCAAAACCGGTAATTTTTGGXXXX
XXXXXXCAAAAAGATGTTGTTCAACGTTTACCAGATAGCGATTCTGAAGATGAATTATTA
AAACAAGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGGATGAA
CCCAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCACCATTT
TCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAATTTCA
AATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATAACAAC
ACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGAACAA
ATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATCAGTA
AATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTC
AGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATGAAATC
ATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTT
TTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTATAAAATC
A
sequence update 1998. 7.17
Translated Amino Acid sequence 
scltpkvhtsvygipttgtdqtqienllsnlgsqnwineivqnslsnifkpnvnnnnqnq
nqstttnnnntttttttsttkneekqkteknenmvehvgitcdgcdskvfgnrykctvch
dydlcsecesrgdqvhptshpllkiaqptpiscswqhsnagrsgiphgfgggrctrkvya
aryladisikrw*CHSKGFLLYQDLEIYVMMVKPLGQKIQTLSFLSGDRFPISKPVIF--
-

---QKDVVQRLPDSDSEDELLKQEQEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSP
FSPFSIQNNVPASVQVPSEISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQE
QIIENVQPQVEELPKLEELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINE
IIDHLLSNQEQ*krs*kifffffclvsff*klinkilyyki
Translated Amino Acid sequence (All Frames) 
Frame A:
scltpkvhtsvygipttgtdqtqienllsnlgsqnwineivqnslsnifkpnvnnnnqnq
nqstttnnnntttttttsttkneekqkteknenmvehvgitcdgcdskvfgnrykctvch
dydlcsecesrgdqvhptshpllkiaqptpiscswqhsnagrsgiphgfgggrctrkvya
aryladisikrw*CHSKGFLLYQDLEIYVMMVKPLGQKIQTLSFLSGDRFPISKPVIF--
-

---QKDVVQRLPDSDSEDELLKQEQEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSP
FSPFSIQNNVPASVQVPSEISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQE
QIIENVQPQVEELPKLEELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINE
IIDHLLSNQEQ*krs*kifffffclvsff*klinkilyyki

Frame B:
vv*hqkfiqvfmvfqqlvliklklkiyfqilvhkig*mklfkihfqiflnqm*iiiikik
inqqqqiiiilqqqqlhqqqkmkknkklkrmkiwlnmlelhvmvviqkylvivinvqfvm
imiyvqnvnhvetkfiqllihy*kshnqlqfhvhgnivtlvvvvfhmvlvvvdvlekfmq
lvi*lifqlkdgsvipkgssftktwrft**w*nllarkyklslsslvidsqyqnr*fl--
-

---kkmlfnvyqiailkmny*nknkkn*kkrkrkkkrkrmnpklkkkpivfvsyhslhhh
fhhfqfkimyqhqfkfhqkfqihsifhqllnnnnkkk*ittqviiqiiinyhhyq*lnkn
kllkmfnhklknyqnlknyq*mvnkkildvnvlvhwfqwvsvilqillklskdiisismk
sltiy*viknnkkdlrksfsfffv*fpffkn**ikfyiiks

Frame C:
lfntkssykclwysnnwy*snsn*kftfkswftkldk*ncskftfkyf*tkck***sksk
sinnnk***yynnnnyinnkk*rktkn*ke*kyg*tcwnym*wl*fksiw*sl*mysls*
l*fmfrm*itwrpsssnfssiienrttnsnfmfmat**rws*wystwfwww*my*kslcs
slfs*yfn*kmvvsfqrvpplprlgdlrndgktswpentnslfplw**ipniktgnfw--
-

---krccstftr*rf*r*iiktrtrkirrrgrgrrrgkg*tqn*rrsr*flfltihsiti
ftifnsk*ctsissssirnfkfiqystsc*ttttrknk*qhk**fk*lsittitss*trt
ny*kcstts*ritkt*riiskw*trry*t*mywyigfngfq*yskyy*nyqki*fqyq*n
h*pfik*srtikkilenlflfflfsflflkink*nfil*n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/                        934   0.0
SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/                        896   0.0
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/                        896   0.0
SSK110 (SSK110Q) /CSM/SS/SSK1-A/SSK110Q.Seq.d/                        896   0.0
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/                        896   0.0
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                        896   0.0
SSE569 (SSE569Q) /CSM/SS/SSE5-C/SSE569Q.Seq.d/                        896   0.0
SLA424 (SLA424Q) /CSM/SL/SLA4-A/SLA424Q.Seq.d/                        896   0.0
SSD283 (SSD283Q) /CSM/SS/SSD2-D/SSD283Q.Seq.d/                        890   0.0
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/                        882   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36  1e-04  9
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  2e-04  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  8e-04  6
AC113870|AC113870.5 Rattus norvegicus clone CH230-291M19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    56  0.001  1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36  0.009  10
AC106411|AC106411.4 Rattus norvegicus clone CH230-82H8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    56  0.010  4
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    46  0.011  11
AE016969|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome.    36  0.030  10
AC018391|AC018391.4 Homo sapiens clone RP11-11G6, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40  0.034  4
AC116387|AC116387.5 Mus musculus clone RP23-37P9, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  0.047  4
dna update 2003. 7.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056852_1(BC056852|pid:none) Xenopus laevis hypothetical protei...    65   7e-09
AK098077_1(AK098077|pid:none) Homo sapiens cDNA FLJ40758 fis, cl...    61   8e-08
BC000951_1(BC000951|pid:none) Homo sapiens, Similar to sequestos...    61   8e-08
(Q5RBA5) RecName: Full=Sequestosome-1; AltName: Full=Ubiquitin-b...    61   8e-08
AY890879_1(AY890879|pid:none) Synthetic construct Homo sapiens c...    61   8e-08
U46752_1(U46752|pid:none) Human phosphotyrosine independent liga...    61   8e-08
BT045678_1(BT045678|pid:none) Salmo salar clone ssal-rgf-528-266...    61   1e-07
AY836662_1(AY836662|pid:none) Aurelia aurita clone 135 oxidative...    60   1e-07
(Q64337) RecName: Full=Sequestosome-1; AltName: Full=Ubiquitin-b...    60   2e-07
AF439403_1(AF439403|pid:none) Rattus norvegicus protein kinase C...    60   2e-07
protein update 2009. 6. 7
PSORT 

 psg: 0.85  gvh: 0.45  alm: 0.45  top: 0.37  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSA184 is cyt
5' end seq. ID SSA184F
5' end seq. 
>SSA184F.Seq
AGTTGTTTAACACCAAAAGTTCATACAAGTGTTTATGGTATTCCAACAACTGGTACTGAT
CAAACTCAAATTGAAAATTTACTTTCAAATCTTGGTTCACAAAATTGGATAAATGAAATT
GTTCAAAATTCACTTTCAAATATTTTTAAACCAAATGTAAATAATAATAATCAAAATCAA
AATCAATCAACAACAACAAATAATAATAATACTACAACAACAACAACTACATCAACAACA
AAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAAAATATGGTTGAACATGTTGGAATT
ACATGTGATGGTTGTGATTCAAAAGTATTTGGTAATCGTTATAAATGTACAGTTTGTCAT
GATTATGATTTATGTTCAGAATGTGAATCACGTGGAGACCAAGTTCATCCAACTTCTCAT
CCATTATTGAAAATCGCACAACCAACTCCAATTTCATGTTCATGGCAACATAGTAACGCT
GGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGTAGATGTACTAGAAAAGTTTATGCA
GCTCGTTATTTAGCTGATATTTCAATTAAAAGATGGTAGTGTCATTCCAAAGGGTTCCTC
CTTTACCAAGACTTGGAGATTTACGTAATGATGGTAAAACCTCTTGGCCAGAAAATACAA
ACTCTCTCTTTCCTCTCTGGTGATAGATTCCCAATATCAAAACCGGTAATTTTTGG----
------
Length of 5' end seq. 716
3' end seq. ID SSA184Z
3' end seq. 
>SSA184Z.Seq
----------CAAAAAGATGTTGTTCAACGTTTACCAGATAGCGATTCTGAAGATGAATT
ATTAAAACAAGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGGA
TGAACCCAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCACC
ATTTTCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAAT
TTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATAA
CAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGA
ACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATC
AGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGG
TTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATGA
AATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTT
CTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTATAA
AATCA
Length of 3' end seq. 655
Connected seq. ID SSA184P
Connected seq. 
>SSA184P.Seq
AGTTGTTTAACACCAAAAGTTCATACAAGTGTTTATGGTATTCCAACAACTGGTACTGAT
CAAACTCAAATTGAAAATTTACTTTCAAATCTTGGTTCACAAAATTGGATAAATGAAATT
GTTCAAAATTCACTTTCAAATATTTTTAAACCAAATGTAAATAATAATAATCAAAATCAA
AATCAATCAACAACAACAAATAATAATAATACTACAACAACAACAACTACATCAACAACA
AAAAATGAAGAAAAACAAAAAACTGAAAAGAATGAAAATATGGTTGAACATGTTGGAATT
ACATGTGATGGTTGTGATTCAAAAGTATTTGGTAATCGTTATAAATGTACAGTTTGTCAT
GATTATGATTTATGTTCAGAATGTGAATCACGTGGAGACCAAGTTCATCCAACTTCTCAT
CCATTATTGAAAATCGCACAACCAACTCCAATTTCATGTTCATGGCAACATAGTAACGCT
GGTCGTAGTGGTATTCCACATGGTTTTGGTGGTGGTAGATGTACTAGAAAAGTTTATGCA
GCTCGTTATTTAGCTGATATTTCAATTAAAAGATGGTAGTGTCATTCCAAAGGGTTCCTC
CTTTACCAAGACTTGGAGATTTACGTAATGATGGTAAAACCTCTTGGCCAGAAAATACAA
ACTCTCTCTTTCCTCTCTGGTGATAGATTCCCAATATCAAAACCGGTAATTTTTGG----
------CAAAAAGATGTTGTTCAACGTTTACCAGATAGCGATTCTGAAGATGAATTATTA
AAACAAGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGGATGAA
CCCAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCACCATTT
TCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAATTTCA
AATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATAACAAC
ACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGAACAA
ATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATCAGTA
AATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTC
AGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATGAAATC
ATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTT
TTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTATAAAATC
A
Length of connected seq. 1371
Full length Seq ID -
Full length Seq. -
Length of full length seq. -