AFK650
Library AF
(Link to library)
Clone ID AFK650
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID AFK650Z
(Link to Original site)
Representative DNA sequence
>AFK650 (AFK650Q) /CSM/AF/AFK6-C/AFK650Q.Seq.d/
XXXXXXXXXXGTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTT
GATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAA
ACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTT
AACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCT
GTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAG
CCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAA
GGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAAT
GAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAAT
AATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTA
ATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
---PEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVN
ITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQG
KDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILM
SKDRKNNCGIASV


Translated Amino Acid sequence (All Frames)
Frame A:
---srrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*
hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr
*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfn
vkg*ke*lwycis*


Frame B:
---PEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVN
ITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQG
KDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILM
SKDRKNNCGIASV


Frame C:
---qkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmlt
llpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkv
kmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*c
qrieriivvlhql


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1138 0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/ 1138 0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/ 1138 0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/ 1138 0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/ 1138 0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/ 1138 0.0
AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/ 1138 0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/ 1138 0.0
AFK761 (AFK761Q) /CSM/AF/AFK7-C/AFK761Q.Seq.d/ 1138 0.0
AFK758 (AFK758Q) /CSM/AF/AFK7-C/AFK758Q.Seq.d/ 1138 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 1138 0.0 1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 961 0.0 4
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read. 595 0.0 2
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 76 5e-48 5
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 88 7e-48 6
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 88 2e-34 6
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 82 7e-15 2
AF426414|AF426414.1 Delia radicum cathepsin L-like cysteine protease precursor (CP1) mRNA, complete cds. 56 4e-12 3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 46 2e-11 4
BQ834906|BQ834906.1 Po_ad_04H08_TEXF1 Psoroptes ovis mixed Psoroptes ovis cDNA clone Po_ad_04H08 5' similar to O46030 CYSTEINE PROTEINASE. Sitophilus zeamais (maize weevil), mRNA sequence. 50 3e-06 3
dna update 2004. 8. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 379 e-104
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 206 4e-52
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 206 4e-52
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 185 7e-46
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 185 7e-46
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 184 1e-45
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 182 6e-45
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like... 180 2e-44
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like... 180 2e-44
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 177 2e-43
protein update 2009. 4.24
PSORT

psg: 0.75 gvh: 0.27 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for AFK650 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFK650Z
3' end seq.
>AFK650Z.Seq
----------GTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTT
GATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAA
ACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTT
AACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCT
GTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAG
CCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAA
GGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAAT
GAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAAT
AATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTA
ATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAG
Length of 3' end seq. 574
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -