>SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAATXXXXXXXXXX

KFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSS
EDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*p
flyv*iyiyi---

Frame A:
vnskrvvllprlhhikklkqamktiykmlyf*iqsqlllmlliivsnftlpvftmnqlvl
lki*imvylllvwvlimvkiitllkivgdhhgv*mvifiwqeikitivesqqwlhillln
hfymyryiyi*---


Frame B:
*iprg*cccqdyii*rn*srr*krftkcftfksslscy*cfs**fptlhcrcll*tslff
*rfrswctccwygy**w*rllhc*k*lgtimgfkwlysygkk*r*qlwnlnngfisyclt
ificidiyiyk---


Frame C:
KFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSS
EDLDHGVLAVGMGTDNGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASYPIA*p
flyv*iyiyi---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM180 (SSM180Q) /CSM/SS/SSM1-D/SSM180Q.Seq.d/                        726   0.0
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/                        726   0.0
SSH103 (SSH103Q) /CSM/SS/SSH1-A/SSH103Q.Seq.d/                        726   0.0
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/                        726   0.0
SSG195 (SSG195Q) /CSM/SS/SSG1-D/SSG195Q.Seq.d/                        726   0.0
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/                        726   0.0
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/                        726   0.0
SSA169 (SSA169Q) /CSM/SS/SSA1-C/SSA169Q.Seq.d/                        726   0.0
SSE594 (SSE594Q) /CSM/SS/SSE5-D/SSE594Q.Seq.d/                        654   0.0
SSJ288 (SSJ288Q) /CSM/SS/SSJ2-D/SSJ288Q.Seq.d/                        642   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    46  8e-08  3
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    58  8e-05  1
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    58  8e-05  1
AI067610|AI067610.1 EST209292 Schistosoma mansoni, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMNCC16 5' end similar to cathepsin L, mRNA sequence.    34  2e-04  3
AI975022|AI975022.1 EST269616 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAA90 5' end similar to cathepsin L, mRNA sequence.    34  3e-04  3
AJ496197|AJ496197.1 Myzus persicae mRNA for putative cathepsin L (catL gene).    42  4e-04  3
AI975620|AI975620.1 EST270214 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAV16 5' end, mRNA sequence.    34  4e-04  3
AI977044|AI977044.1 EST271638 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAE72 5' end, mRNA sequence.    34  4e-04  3
AI977557|AI977557.1 EST272151 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAN82 5' end, mRNA sequence.    34  4e-04  3
AI977348|AI977348.1 EST271942 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAI24 5' end, mRNA sequence.    34  4e-04  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ...   167   1e-40
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   155   3e-37
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   154   1e-36
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   154   1e-36
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...   153   2e-36
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...   152   3e-36
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   150   1e-35
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ...   150   1e-35
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50...   150   1e-35
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   150   2e-35

 psg: 0.57  gvh: 0.57  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for SSA169 is cyt

>SSA169F.Seq
GTAAATTCCAAGAGGGTAGTGTTGCTGCCAAGATTACATCATATAAAGAAATTGAAGCAG
GCGATGAAAACGATTTACAAAATGCTTTACTTTTAAATCCAGTCTCAGTTGCTATTGATG
CTTCTCATAATAGTTTCCAACTTTACACTGCCGGTGTTTACTATGAACCAGCTTGTTCTT
CTGAAGATTTAGATCATGGTGTACTTGCTGTTGGTATGGGTACTGATAATGGTGAAGATT
ATTACATTGTTAAAAATAGTTGGGGACCATCATGGGGTTTAAATGGTTATATTCATATGG
CAAGAAATAAAGATAACAATTGTGGAATCTCAACAATGGCTTCATATCCTATTGCTTAAC
CATTTTTATATGTATAGATATATATATATATAAAT----------