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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA166
Library SS
(Link to library)
Clone ID SSA166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14969-1
Original site URL
Representative seq. ID SSA166F
(Link to Original site)
Representative DNA sequence 
>SSA166 (SSA166Q) /CSM/SS/SSA1-C/SSA166Q.Seq.d/
GCAAGATCAACTGCTGTCTCAACTTATTTTTAGCCAACAAACTATCACTTTTCAATCATT
TCGAGATCGGAATTTTTTCATTTCAATTTCTTTAATGATTTTTCCTCAAAACCAAGAATT
TTTTGTTCATCTAAATCAAATTATATCTTTAAATCCTTTGTAAAAATTTAAATTAATAAT
AATAATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
TATATATCCAAGACCCCAAGAATCTCACCAAAAAAAAAAAAAAAAAAAAAAAAATGGAAA
ACCAAAAAACCCTTTTTTTTTTTTTTTTTTCCTTGGAACCCTTTAAAAAAAAATTTAAAA
TTTTTAAAAACCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1998. 3. 6
Translated Amino Acid sequence 
arstavstyf*ptnyhfsiisrseffhfnffndfsskprifcssksnyifksfvki*INN
NNNKKKKKEKKKKKKKKKKIYISKTPRISPKKKKKKKKWKTKKPFFFFFFPWNPLKKNLK
FLKTPKKKKKKKKKKKKKKKKKKKKKKKKKK---
Translated Amino Acid sequence (All Frames) 
Frame A:
arstavstyf*ptnyhfsiisrseffhfnffndfsskprifcssksnyifksfvki*INN
NNNKKKKKEKKKKKKKKKKIYISKTPRISPKKKKKKKKWKTKKPFFFFFFPWNPLKKNLK
FLKTPKKKKKKKKKKKKKKKKKKKKKKKKKK---


Frame B:
qdqllsqlifsqqtitfqsfrdrnffisislmifpqnqeffvhlnqiislnpl*kfklii
iiikkkkkkkkkkkkkkkkyiyprpqeshqkkkkkkkngkpknpfffffflgtl*kki*n
f*kppkkkkkkkkkkkkkkkkkkkkkkkkkk---


Frame C:
kincclnlflanklslfnhfeigifsfqfl**fflktknflfi*iklyl*ilcknln***
***kkkkrkkkkkkkkkkniyiqdpknltkkkkkkkkmenqktlfffffslepfkkkfki
fknpqkkkkkkkkkkkkkkkkkkkkkkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK402 (VSK402Q) /CSM/VS/VSK4-A/VSK402Q.Seq.d/                        137   2e-31
SSL708 (SSL708Q) /CSM/SS/SSL7-A/SSL708Q.Seq.d/                        137   2e-31
SSA443 (SSA443Q) /CSM/SS/SSA4-B/SSA443Q.Seq.d/                        137   2e-31
SSA166 (SSA166Q) /CSM/SS/SSA1-C/SSA166Q.Seq.d/                        137   2e-31
SLE317 (SLE317Q) /CSM/SL/SLE3-A/SLE317Q.Seq.d/                        137   2e-31
SLC314 (SLC314Q) /CSM/SL/SLC3-A/SLC314Q.Seq.d/                        137   2e-31
SLA828 (SLA828Q) /CSM/SL/SLA8-B/SLA828Q.Seq.d/                        137   2e-31
FC-BF18 (FC-BF18Q) /CSM/FC/FC-BF/FC-BF18Q.Seq.d/                      137   2e-31
FC-423 (FC-423Q) /CSM/CG/CG-FC/FC-423Q.Seq.d/                         137   2e-31
AHE156 (AHE156Q) /CSM/AH/AHE1-C/AHE156Q.Seq.d/                        137   2e-31
own update 2002.12.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   137  1e-29  3
AV111376|AV111376.1 Mus musculus 10-day embryo cDNA, partial sequence, clone 2610001I01.    42  5.8  1
E43780|E43780.1 Genes encoding enzymes participating in the biosynthesis of icosapentaenoic acid and/or docosahexaenoic acid.    42  5.8  1
AC106806|AC106806.2 Homo sapiens chromosome 5 clone RP11-510I6, complete sequence.    42  5.8  1
AC112190|AC112190.1 Homo sapiens chromosome 5 clone RP11-326C11, WORKING DRAFT SEQUENCE, 1 ordered pieces.    42  5.8  1
dna update 2003. 7.13
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 263,191,404
protein update 2009. 6. 7
PSORT 

 psg: 0.03  gvh: 0.17  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 3.73  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSA166 is nuc
5' end seq. ID SSA166F
5' end seq. 
>SSA166F.Seq
GCAAGATCAACTGCTGTCTCAACTTATTTTTAGCCAACAAACTATCACTTTTCAATCATT
TCGAGATCGGAATTTTTTCATTTCAATTTCTTTAATGATTTTTCCTCAAAACCAAGAATT
TTTTGTTCATCTAAATCAAATTATATCTTTAAATCCTTTGTAAAAATTTAAATTAATAAT
AATAATAATAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
TATATATCCAAGACCCCAAGAATCTCACCAAAAAAAAAAAAAAAAAAAAAAAAATGGAAA
ACCAAAAAACCCTTTTTTTTTTTTTTTTTTCCTTGGAACCCTTTAAAAAAAAATTTAAAA
TTTTTAAAAACCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------
Length of 5' end seq. 455
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -