SSA154
Library SS
(Link to library)
Clone ID SSA154
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16544-1
Original site URL
Representative seq. ID SSA154E
(Link to Original site)
Representative DNA sequence
>SSA154 (SSA154Q) /CSM/SS/SSA1-C/SSA154Q.Seq.d/
ATTTTTACGTAAATGGAGCTAAAGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAA
GAAGTACTCTAGAAGCAAACATATAATTTTTTGTTAAATTAATAATTGCACAAAAAATGC
AACAAATTAAATAAATAAATAAAAAAAAAAAAATAATTCACAAATTATTTTATTTAATTT
ATATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
sequence update 1997. 6.21
Translated Amino Acid sequence
fyvngakvsefsganeatlrstleani*ffvkliiaqkmqqik*INKKKKIIHKLFYLIY
ILKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ift*melkyqnsvvpmkql*evl*kqtynflln**lhkkcnklnk*ikkkk*ftnyfi*f
if*kkkkkkkkkkkkkkkkkkkkkk


Frame B:
flrkws*siriqwcq*snskkysrskhiifc*innctknatn*ink*kkknnsqiilfnl
yfkkkkkkkkkkkkkkkkkkkkkk


Frame C:
fyvngakvsefsganeatlrstleani*ffvkliiaqkmqqik*INKKKKIIHKLFYLIY
ILKKKKKKKKKKKKKKKKKKKKKK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSK430 (VSK430Q) /CSM/VS/VSK4-B/VSK430Q.Seq.d/ 278 4e-74
VSJ595 (VSJ595Q) /CSM/VS/VSJ5-D/VSJ595Q.Seq.d/ 278 4e-74
VSH762 (VSH762Q) /CSM/VS/VSH7-C/VSH762Q.Seq.d/ 278 4e-74
VSH381 (VSH381Q) /CSM/VS/VSH3-D/VSH381Q.Seq.d/ 278 4e-74
VSG372 (VSG372Q) /CSM/VS/VSG3-C/VSG372Q.Seq.d/ 278 4e-74
VSF839 (VSF839Q) /CSM/VS/VSF8-B/VSF839Q.Seq.d/ 278 4e-74
VSF259 (VSF259Q) /CSM/VS/VSF2-C/VSF259Q.Seq.d/ 278 4e-74
VSB306 (VSB306Q) /CSM/VS/VSB3-A/VSB306Q.Seq.d/ 278 4e-74
VSA356 (VSA356Q) /CSM/VS/VSA3-C/VSA356Q.Seq.d/ 278 4e-74
VFE203 (VFE203Q) /CSM/VF/VFE2-A/VFE203Q.Seq.d/ 278 4e-74

own update 2001.11.20
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M91383|M91383.1 Dictyostelium discoideum thioredoxin (TRX3) mRNA, complete cds. 278 3e-71 1
M91384|M91384.1 Dictyostelium discoideum thioredoxin (TRX1) mRNA, complete cds. 206 1e-59 2
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence. 36 2e-04 6
BX548032|BX548032.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-145G9. 44 4e-04 3
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 5e-04 6
M91382|M91382.1 Dictyostelium discoideum thioredoxin (TRX2) mRNA, 5' end. 54 8e-04 1
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 34 0.004 5
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P2. 40 0.005 5
AE002100|AE002100.1 Ureaplasma urealyticum section 1 of 59 of the complete genome. 40 0.007 3
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P4. 40 0.024 5
dna update 2003. 7.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P29447) RecName: Full=Thioredoxin-3; Short=Trx-3; 55 6e-07
C46264(C46264) thioredoxin 3 - slime mold (Dictyostelium discoid... 55 6e-07
BT057388_1(BT057388|pid:none) Salmo salar clone ssal-evd-551-253... 35 0.63
BT056690_1(BT056690|pid:none) Salmo salar clone ssal-eve-542-050... 35 0.63
BT056501_1(BT056501|pid:none) Salmo salar clone ssal-evd-523-034... 35 0.63
BT057083_1(BT057083|pid:none) Salmo salar clone ssal-eve-555-101... 35 0.63
BT073335_1(BT073335|pid:none) Oncorhynchus mykiss clone omyk-evn... 35 0.83
(Q9DGI3) RecName: Full=Thioredoxin; Short=Trx; &AF2936... 34 1.4
BC072884_1(BC072884|pid:none) Xenopus laevis MGC80314 protein, m... 34 1.8
AY242060_1(AY242060|pid:none) Melopsittacus undulatus thioredoxi... 33 3.1
protein update 2009. 7. 5
PSORT

psg: 0.93 gvh: 0.25 alm: 0.56 top: 0.63 tms: 0.00 mit: 0.35 mip: 0.00
nuc: 2.11 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SSA154 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSA154E
Full length Seq.
>SSA154E.Seq
ATTTTTACGTAAATGGAGCTAAAGTATCAGAATTCAGTGGTGCCAATGAAGCAACTCTAA
GAAGTACTCTAGAAGCAAACATATAATTTTTTGTTAAATTAATAATTGCACAAAAAATGC
AACAAATTAAATAAATAAATAAAAAAAAAAAAATAATTCACAAATTATTTTATTTAATTT
ATATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Length of full length seq. 255