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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA153
Library SS
(Link to library)
Clone ID SSA153
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10248-1
Original site URL
Representative seq. ID SSA153F
(Link to Original site)
Representative DNA sequence 
>SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/
ATTTGCAGATAACTCTTTTCAAGAGACTTCAGTAAATATGACTAGTGTCGATTATAAAAA
TAAAAATATAGTTATTGATGGTAGAACATTTAATTTACAAATTTGGGATACAGCAGGACA
AGAAAGATTTAGAACAATTACATCATCTTTTTATAGAGGAGCACATGGCGTTTTAGTTTG
TTATGACGTAACAGATCAACTTACATATAATAACGTTAGATTATGGATGCAAGAAATTCA
AAGATATGCAGTACTTGGCGTTAGTGAGAGTTTGAGTTGGAAACAAATGCGATCTCGAAG
ATAGAAAATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATCCATT
CAGGAAGCTTCGCTGCAACCGGTGTTAATGTTGAAGAGGCTTTCATGGCAATGGCAAATG
AAATTTATAGAAATCATAGTGGTTGGTCCAAAACCTCCGGTTGXXXXXXXXXX
sequence update 1998. 3. 6
Translated Amino Acid sequence 
FADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVC
YDVTDQLTYNNVRLWMQEIQRYAVLGVSESLSWKQMRSRR*kigkhinckricr*swypf
rklrcnrc*c*rgfhgngk*nl*ks*wlvqnlr---
Translated Amino Acid sequence (All Frames) 
Frame A:
icr*lfsrdfskyd*crl*k*kysy*w*ni*ftnlgysrtrki*nnyiifl*rstwrfsl
l*rnrstyi**r*imdarnskicstwr**efeletnaiskienw*thqlqenmpivlvsi
qeaslqpvlmlkrlswqwqmkfieiivvgpkppv---


Frame B:
FADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVC
YDVTDQLTYNNVRLWMQEIQRYAVLGVSESLSWKQMRSRR*kigkhinckricr*swypf
rklrcnrc*c*rgfhgngk*nl*ks*wlvqnlr---


Frame C:
lqitlfkrlq*i*lvsiikiki*llmvehliykfgiqqdkkdleqlhhlfieehmaf*fv
mt*qinlhiitldygckkfkdmqylalvrv*vgnkcdledrklvntsiareyadslgihs
gsfaatgvnveeafmamaneiyrnhsgwsktsg---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA153 (SSA153Q) /CSM/SS/SSA1-C/SSA153Q.Seq.d/                        918   0.0
SSH468 (SSH468Q) /CSM/SS/SSH4-C/SSH468Q.Seq.d/                        799   0.0
SSF791 (SSF791Q) /CSM/SS/SSF7-D/SSF791Q.Seq.d/                        799   0.0
SSC869 (SSC869Q) /CSM/SS/SSC8-C/SSC869Q.Seq.d/                        799   0.0
VSD412 (VSD412Q) /CSM/VS/VSD4-A/VSD412Q.Seq.d/                        745   0.0
VSD572 (VSD572Q) /CSM/VS/VSD5-C/VSD572Q.Seq.d/                        670   0.0
VFJ330 (VFJ330Q) /CSM/VF/VFJ3-B/VFJ330Q.Seq.d/                        615   e-175
SSD504 (SSD504Q) /CSM/SS/SSD5-A/SSD504Q.Seq.d/                        573   e-163
SSF195 (SSF195Q) /CSM/SS/SSF1-D/SSF195Q.Seq.d/                        519   e-146
SSG849 (SSG849Q) /CSM/SS/SSG8-C/SSG849Q.Seq.d/                        458   e-128
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L21009|L21009.1 Dictyostelium discoideum Rab1A mRNA, complete cds.   100  1e-17  2
L21010|L21010.1 Dictyostelium discoideum Rab1B mRNA, 3' end of cds.    56  6e-14  3
BU094630|BU094630.1 rf51a01.y2 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BQ089913|BQ089913.1 rc54e04.y2 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM900290|BM900290.1 rc16h12.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM884317|BM884317.1 rc21h02.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM883217|BM883217.1 rc04d07.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM883617|BM883617.1 rc08h04.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM900266|BM900266.1 rc16f12.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
BM901323|BM901323.1 rc27f03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to SW:RB35_HUMAN Q15286 RAS-RELATED PROTEIN RAB-35 ;, mRNA sequence.    84  2e-12  1
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E92) RecName: Full=Ras-related protein RabG1;                     170   6e-63
(P34140) RecName: Full=Ras-related protein Rab-1B;                    120   7e-39
L21010_1(L21010|pid:none) Dictyostelium discoideum Rab1B mRNA, 3...   114   4e-37
BT059700_1(BT059700|pid:none) Salmo salar clone ssal-rgf-002-342...   120   1e-36
(P22125) RecName: Full=Ras-related protein ORAB-1;  &M38393_1(M3...   120   1e-36
BC045014_1(BC045014|pid:none) Xenopus laevis RAB1, member RAS on...   120   3e-36
BC097013_1(BC097013|pid:none) Danio rerio zgc:86773, mRNA (cDNA ...   120   3e-36
EF103367_1(EF103367|pid:none) Haliotis discus discus Ras-related...   120   4e-36
BT057068_1(BT057068|pid:none) Salmo salar clone ssal-eve-570-039...   120   5e-36
DQ214474_1(DQ214474|pid:none) Taeniopygia guttata clone 0063P003...   120   7e-36
protein update 2009. 6. 7
PSORT 

 psg: 0.75  gvh: 0.44  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSA153 is cyt
5' end seq. ID SSA153F
5' end seq. 
>SSA153F.Seq
ATTTGCAGATAACTCTTTTCAAGAGACTTCAGTAAATATGACTAGTGTCGATTATAAAAA
TAAAAATATAGTTATTGATGGTAGAACATTTAATTTACAAATTTGGGATACAGCAGGACA
AGAAAGATTTAGAACAATTACATCATCTTTTTATAGAGGAGCACATGGCGTTTTAGTTTG
TTATGACGTAACAGATCAACTTACATATAATAACGTTAGATTATGGATGCAAGAAATTCA
AAGATATGCAGTACTTGGCGTTAGTGAGAGTTTGAGTTGGAAACAAATGCGATCTCGAAG
ATAGAAAATTGGTAAACACATCAATTGCAAGAGAATATGCCGATAGTCTTGGTATCCATT
CAGGAAGCTTCGCTGCAACCGGTGTTAATGTTGAAGAGGCTTTCATGGCAATGGCAAATG
AAATTTATAGAAATCATAGTGGTTGGTCCAAAACCTCCGGTTG----------
Length of 5' end seq. 463
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -