>SSA147 (SSA147Q) /CSM/SS/SSA1-B/SSA147Q.Seq.d/
ATTCATTCATACATTTAATCAAACAATGAATTCTACTCGTAATATCATTTCATTAGTTCG
TCGTTATTCAACTTCAAGAAGTGTTAAAATCGCTTCACATGGTTCACCATCAACTGCTTT
AAAGATTGAAAATGAAAATATTACAGATAAAATTTCAAATAAAGATGTTTTAGTTGAAAT
GTTACATGCACCAATTAATCCAGCAGATTTAAATATTATTCAAGGTACTTATGGTACAAA
TGTTCAAGTTGGAGGTGTAGCAGGTATGGAAGGTGTTGGTGTTGTTAAAAAGGTTGGTAG
TGGTGTTACAGGATTAAAAGAGAATGATTTAGTAGTACCATCAATGAAACAACACTTTGG
ATCATGGAGAAGTAAAGGTGTTTGGAGTGAACAACAATTATTTAAAGTACCATCAGACAT
TCCAACCGAATACTTATCCACCATTTCAATCAATCCAACCACTGCCTATTTGTTATTGAA
CGATTTCGTAAAGTTACAACAAGGCGATGTCATCATTCAAAACGCATCCAACTCAATGGT
TGGTTTGTCAGTCATTCAATTGGCAAAGGCACGTGGXXXXXXXXXXCCATCAATGTCATT
CGTGCCGGTTCAGAATTCGAAGACAACGTCCAACGTCTCAAGCCAGTTGGGTGGCGACAT
CGTCGTCTCTGAAGAGTACGTTCGTACACCGGCATTCAGAAAATTAATCTCTGATTTACC
ATCACCAAAATTGGCATTAAACGCCGTCGGTGGTCAATCCGCCACCGAGTTATCAAGAAT
CCTCGCTGACAATGGTACCTTGGTCACTTATGGTGGTATGTCTCGTGAACCAGTCACCAT
TCCAACCTCTCAATTGATCTTCCGTAACATTCAAATTCGTGGTTTTTNNNTAAATAAATG
GTTTGAACAACATACTGACTCTGAAAAACAATCTGTCTATGATGCTATCTTTGATCTTAT
CCGTAAGAAACAATTTAAACTTTTAATTGAAAAACATAAATTCTCTGAATTTGATCAAGC
TTTATTAAAATCACAACAATCTGGTCATGGTAGAAAAATTGTTTTAGATTTACAATTGTA
ATAAAAAAAAAANNNNNATAATAATAATAATATAAAATCAAGAAAGAAATAATATATAAT
ATATATAATTATCACTCTTTTTTTTATTTCTACTTAGGTTGTAAAAAATATAAATAAGGA
ATTTTGAAAGAGTGTGTAATTAATTTAAAAAAAAAAATAAAAATAAAAATAAAAAAAATA
AAAATAAAAATA

FIHTFNQTMNSTRNIISLVRRYSTSRSVKIASHGSPSTALKIENENITDKISNKDVLVEM
LHAPINPADLNIIQGTYGTNVQVGGVAGMEGVGVVKKVGSGVTGLKENDLVVPSMKQHFG
SWRSKGVWSEQQLFKVPSDIPTEYLSTISINPTTAYLLLNDFVKLQQGDVIIQNASNSMV
GLSVIQLAKAR---

---PSMSFVPVQNSKTTSNVSSQLGGDIVVSEEYVRTPAFRKLISDLPSPKLALNAVGGQ
SATELSRILADNGTLVTYGGMSREPVTIPTSQLIFRNIQIRGFXXNKWFEQHTDSEKQSV
YDAIFDLIRKKQFKLLIEKHKFSEFDQALLKSQQSGHGRKIVLDLQL**kkxxxnnnnik
srkk*yiiyiiitlffist*vvkninkef*ksv*li*kkk*k*k*kk*k*k

Frame A:
ihsyi*snnefys*yhfissslfnfkkc*nrftwftincfkd*k*kyyr*nfk*rcfs*n
vtctn*ssrfkyysrylwykcsswrcsrygrcwcc*kgw*wcyrikre*fsstinettlw
imek*rcle*ttii*stirhsnrilihhfnqsnhclfvierfrkvttrrchhskriqlng
wfvshsigkgtw---

---PSMSFVPVQNSKTTSNVSSQLGGDIVVSEEYVRTPAFRKLISDLPSPKLALNAVGGQ
SATELSRILADNGTLVTYGGMSREPVTIPTSQLIFRNIQIRGFXXNKWFEQHTDSEKQSV
YDAIFDLIRKKQFKLLIEKHKFSEFDQALLKSQQSGHGRKIVLDLQL**kkxxxnnnnik
srkk*yiiyiiitlffist*vvkninkef*ksv*li*kkk*k*k*kk*k*k

Frame B:
FIHTFNQTMNSTRNIISLVRRYSTSRSVKIASHGSPSTALKIENENITDKISNKDVLVEM
LHAPINPADLNIIQGTYGTNVQVGGVAGMEGVGVVKKVGSGVTGLKENDLVVPSMKQHFG
SWRSKGVWSEQQLFKVPSDIPTEYLSTISINPTTAYLLLNDFVKLQQGDVIIQNASNSMV
GLSVIQLAKAR---

---hqchscrfrirrqrptsqaswvatssslkstfvhrhsen*sliyhhqnwh*tpsvvn
pppsyqessltmvpwslmvvclvnqspfqpln*ssvtfkfvvfx*inglnniltlknnls
mmlslilsvrnnlnf*lkninslnlikly*nhnnlvmveklf*iyncnkkkxxiiiii*n
qernni*yi*lslfflfllrl*ki*irnfervcn*fkkknknknkknknkn

Frame C:
sfihlikq*illvisfh*fvviqlqevlkslhmvhhqll*rlkmkilqikfqikmf*lkc
ymhqliqqi*ilfkvlmvqmfklev*qvwkvlvllkrlvvvlqd*krmi**yhq*nntld
hgevkvfgvnnnylkyhqtfqpntyppfqsiqplpicy*tis*synkamssfkthptqwl
vcqsfnwqrhv---

---inviragsefednvqrlkpvgwrhrrl*rvrsytgiqkinl*ftitkigikrrrwsi
rhrviknpr*qwylghlwwyvs*tshhsnlsidlp*hsnswfxxk*mv*tty*l*kticl
*cyl*syp*eti*tfn*kt*il*i*ssfikittiwsw*kncfrftivikkkxx****yki
kkeiiyniynyhsffyfylgckkyk*gilkecvinlkkkikikikkikiki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA147 (SSA147Q) /CSM/SS/SSA1-B/SSA147Q.Seq.d/                       2038   0.0
VFF748 (VFF748Q) /CSM/VF/VFF7-B/VFF748Q.Seq.d/                       1941   0.0
VFF332 (VFF332Q) /CSM/VF/VFF3-B/VFF332Q.Seq.d/                       1929   0.0
VFK669 (VFK669Q) /CSM/VF/VFK6-C/VFK669Q.Seq.d/                       1925   0.0
VFL162 (VFL162Q) /CSM/VF/VFL1-C/VFL162Q.Seq.d/                       1903   0.0
VFE458 (VFE458Q) /CSM/VF/VFE4-C/VFE458Q.Seq.d/                       1901   0.0
VFI824 (VFI824Q) /CSM/VF/VFI8-A/VFI824Q.Seq.d/                       1895   0.0
VFJ221 (VFJ221Q) /CSM/VF/VFJ2-A/VFJ221Q.Seq.d/                       1877   0.0
VFO582 (VFO582Q) /CSM/VF/VFO5-D/VFO582Q.Seq.d/                       1852   0.0
VFA309 (VFA309Q) /CSM/VF/VFA3-A/VFA309Q.Seq.d/                       1808   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    46  0.068  6
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    36  0.20  7
BF059813|T26323 hypothetical protein W09H1.5 - Caenorhabditis elegans, mRNA sequence.    46  1.0  1
CA958218|CA958218.1 px57a01.y1 Haemonchus contortus intestine SL2 TOPO v1 Haemonchus contortus cDNA 5' similar to TR:O45903 O45903 W09H1.5 PROTEIN. [1] ;, mRNA sequence.    46  1.0  1
CA957710|CA957710.1 px56a01.y1 Haemonchus contortus intestine SL2 TOPO v1 Haemonchus contortus cDNA 5' similar to TR:O45903 O45903 W09H1.5 PROTEIN. [1] ;, mRNA sequence.    46  1.0  1
U43375|U43375.1 Caenorhabditis elegans cosmid K09C4.    46  1.0  1
AC125151|AC125151.1 Mus musculus chromosome UNK clone RP24-355K8, WORKING DRAFT SEQUENCE, 194 unordered pieces.    46  1.0  1
AC131705|AC131705.3 Mus musculus chromosome UNK clone RP24-130N16, WORKING DRAFT SEQUENCE, 8 unordered pieces.    46  1.0  1
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    38  1.7  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34  2.0  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Z311) RecName: Full=Trans-2-enoyl-CoA reductase, mitochondria...   216   2e-54
CR761275_1(CR761275|pid:none) Xenopus tropicalis finished cDNA, ...   215   3e-54
AF151821_1(AF151821|pid:none) Homo sapiens CGI-63 protein mRNA, ...   213   1e-53
CR456703_1(CR456703|pid:none) Homo sapiens full open reading fra...   212   2e-53
AL590729_2(AL590729|pid:none) Human DNA sequence from clone RP11...   212   2e-53
BT047630_1(BT047630|pid:none) Salmo salar clone ssal-evf-523-019...   199   2e-49
AC135230_7(AC135230|pid:none) Medicago truncatula clone mth2-23e...   187   7e-46
AP008218_5(AP008218|pid:none) Oryza sativa (japonica cultivar-gr...   187   9e-46
(Q9V6U9) RecName: Full=Probable trans-2-enoyl-CoA reductase, mit...   184   6e-45
AY062554_1(AY062554|pid:none) Arabidopsis thaliana oxidoreductas...   182   3e-44

 psg: 0.76  gvh: 0.41  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.58  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: nuclear

>> prediction for SSA147 is mit

>SSA147F.Seq
ATTCATTCATACATTTAATCAAACAATGAATTCTACTCGTAATATCATTTCATTAGTTCG
TCGTTATTCAACTTCAAGAAGTGTTAAAATCGCTTCACATGGTTCACCATCAACTGCTTT
AAAGATTGAAAATGAAAATATTACAGATAAAATTTCAAATAAAGATGTTTTAGTTGAAAT
GTTACATGCACCAATTAATCCAGCAGATTTAAATATTATTCAAGGTACTTATGGTACAAA
TGTTCAAGTTGGAGGTGTAGCAGGTATGGAAGGTGTTGGTGTTGTTAAAAAGGTTGGTAG
TGGTGTTACAGGATTAAAAGAGAATGATTTAGTAGTACCATCAATGAAACAACACTTTGG
ATCATGGAGAAGTAAAGGTGTTTGGAGTGAACAACAATTATTTAAAGTACCATCAGACAT
TCCAACCGAATACTTATCCACCATTTCAATCAATCCAACCACTGCCTATTTGTTATTGAA
CGATTTCGTAAAGTTACAACAAGGCGATGTCATCATTCAAAACGCATCCAACTCAATGGT
TGGTTTGTCAGTCATTCAATTGGCAAAGGCACGTGG----------

>SSA147Z.Seq
----------CCATCAATGTCATTCGTGCCGGTTCAGAATTCGAAGACAACGTCCAACGT
CTCAAGCCAGTTGGGTGGCGACATCGTCGTCTCTGAAGAGTACGTTCGTACACCGGCATT
CAGAAAATTAATCTCTGATTTACCATCACCAAAATTGGCATTAAACGCCGTCGGTGGTCA
ATCCGCCACCGAGTTATCAAGAATCCTCGCTGACAATGGTACCTTGGTCACTTATGGTGG
TATGTCTCGTGAACCAGTCACCATTCCAACCTCTCAATTGATCTTCCGTAACATTCAAAT
TCGTGGTTTTTNNNTAAATAAATGGTTTGAACAACATACTGACTCTGAAAAACAATCTGT
CTATGATGCTATCTTTGATCTTATCCGTAAGAAACAATTTAAACTTTTAATTGAAAAACA
TAAATTCTCTGAATTTGATCAAGCTTTATTAAAATCACAACAATCTGGTCATGGTAGAAA
AATTGTTTTAGATTTACAATTGTAATAAAAAAAAAANNNNNATAATAATAATAATATAAA
ATCAAGAAAGAAATAATATATAATATATATAATTATCACTCTTTTTTTTATTTCTACTTA
GGTTGTAAAAAATATAAATAAGGAATTTTGAAAGAGTGTGTAATTAATTTAAAAAAAAAA
ATAAAAATAAAAATAAAAAAAATAAAAATAAAAATA

>SSA147P.Seq
ATTCATTCATACATTTAATCAAACAATGAATTCTACTCGTAATATCATTTCATTAGTTCG
TCGTTATTCAACTTCAAGAAGTGTTAAAATCGCTTCACATGGTTCACCATCAACTGCTTT
AAAGATTGAAAATGAAAATATTACAGATAAAATTTCAAATAAAGATGTTTTAGTTGAAAT
GTTACATGCACCAATTAATCCAGCAGATTTAAATATTATTCAAGGTACTTATGGTACAAA
TGTTCAAGTTGGAGGTGTAGCAGGTATGGAAGGTGTTGGTGTTGTTAAAAAGGTTGGTAG
TGGTGTTACAGGATTAAAAGAGAATGATTTAGTAGTACCATCAATGAAACAACACTTTGG
ATCATGGAGAAGTAAAGGTGTTTGGAGTGAACAACAATTATTTAAAGTACCATCAGACAT
TCCAACCGAATACTTATCCACCATTTCAATCAATCCAACCACTGCCTATTTGTTATTGAA
CGATTTCGTAAAGTTACAACAAGGCGATGTCATCATTCAAAACGCATCCAACTCAATGGT
TGGTTTGTCAGTCATTCAATTGGCAAAGGCACGTGG----------CCATCAATGTCATT
CGTGCCGGTTCAGAATTCGAAGACAACGTCCAACGTCTCAAGCCAGTTGGGTGGCGACAT
CGTCGTCTCTGAAGAGTACGTTCGTACACCGGCATTCAGAAAATTAATCTCTGATTTACC
ATCACCAAAATTGGCATTAAACGCCGTCGGTGGTCAATCCGCCACCGAGTTATCAAGAAT
CCTCGCTGACAATGGTACCTTGGTCACTTATGGTGGTATGTCTCGTGAACCAGTCACCAT
TCCAACCTCTCAATTGATCTTCCGTAACATTCAAATTCGTGGTTTTTNNNTAAATAAATG
GTTTGAACAACATACTGACTCTGAAAAACAATCTGTCTATGATGCTATCTTTGATCTTAT
CCGTAAGAAACAATTTAAACTTTTAATTGAAAAACATAAATTCTCTGAATTTGATCAAGC
TTTATTAAAATCACAACAATCTGGTCATGGTAGAAAAATTGTTTTAGATTTACAATTGTA
ATAAAAAAAAAANNNNNATAATAATAATAATATAAAATCAAGAAAGAAATAATATATAAT
ATATATAATTATCACTCTTTTTTTTATTTCTACTTAGGTTGTAAAAAATATAAATAAGGA
ATTTTGAAAGAGTGTGTAATTAATTTAAAAAAAAAAATAAAAATAAAAATAAAAAAAATA
AAAATAAAAATA