>SSA135 (SSA135Q) /CSM/SS/SSA1-B/SSA135Q.Seq.d/
AAAGAGATAAAATAAATTACTATAAATTAGTTGTGATATTAATTTTATTGTTAATTTGGA
AAATTTAATAAAAACAAATAAATAATAAATACCCCCACATTTTTAAAATTAAAATAATTA
ATCGATTAAAAAATGAAAAGTATTAAAGTTTGTGTTGTTGGCGAAGGTGGAATTGGTAAA
ACATCAATGTTATTAAGTTATACATCAAATTCAATTTCAAATGAATATCAACCAACAGTA
TTTGATAACTATTCAACTTTATTAATGCATAATAAAAAACCATATAATTTATCATTGTGG
GATACTGCAGGTCAAGAAGAGTTTAGTAAATTAAGAAGGTTAAGTTATCCTCAAACTGAT
GTATTTTTATTATGTTTTTCACTTATAAATCCATCATCATTTTCAAATATTTTAGATTCA
TGGGTACAAGAATTAAATGAAAATTGTCCAAATACTCCAATAGTTTTAGTTGGACTCAAA
TGGATTTAAAATCAAATTCAGTTATACTGGATAGACTATGTGAAAAAAAAAXXXXXXXXX
X

keik*itin*l*y*fyc*fgkfnknk*iintptflklk*lid*KMKSIKVCVVGEGGIGK
TSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTD
VFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGLKWI*nqiqlywidyvkk---

Frame A:
keik*itin*l*y*fyc*fgkfnknk*iintptflklk*lid*KMKSIKVCVVGEGGIGK
TSMLLSYTSNSISNEYQPTVFDNYSTLLMHNKKPYNLSLWDTAGQEEFSKLRRLSYPQTD
VFLLCFSLINPSSFSNILDSWVQELNENCPNTPIVLVGLKWI*nqiqlywidyvkk---


Frame B:
kr*nkll*iscdinfivnlenliktnk**ipphf*n*nn*sikk*kvlkfvllakvelvk
hqcy*vihqiqfqmninqqylitiqly*ciiknhiiyhcgilqvkkslvn*eg*vilklm
yfyyvfhl*ihhhfqif*ihgykn*mkivqilq*f*ldsngfkikfsytg*tm*kk---


Frame C:
rdkinyyklvvilillliwki**kqinnkyphifkikiinrlkneky*slccwrrwnw*n
inviklyikfnfk*istnsi**lfnfina**kti*fiivgycrsrrv**ikkvklssn*c
ifimfftyksiiifkyfrfmgtrik*klskysnsfswtqmdlksnsvildrlcekk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA135 (SSA135Q) /CSM/SS/SSA1-B/SSA135Q.Seq.d/                        743   0.0
SSK569 (SSK569Q) /CSM/SS/SSK5-C/SSK569Q.Seq.d/                        729   0.0
SSJ554 (SSJ554Q) /CSM/SS/SSJ5-C/SSJ554Q.Seq.d/                        729   0.0
SSI821 (SSI821Q) /CSM/SS/SSI8-A/SSI821Q.Seq.d/                        729   0.0
SSF651 (SSF651Q) /CSM/SS/SSF6-C/SSF651Q.Seq.d/                        729   0.0
SSE378 (SSE378Q) /CSM/SS/SSE3-D/SSE378Q.Seq.d/                        644   0.0
SSJ369 (SSJ369Q) /CSM/SS/SSJ3-C/SSJ369Q.Seq.d/                        624   e-178
SSD534 (SSD534Q) /CSM/SS/SSD5-B/SSD534Q.Seq.d/                        533   e-151
SSM838 (SSM838Q) /CSM/SS/SSM8-B/SSM838Q.Seq.d/                        349   3e-95
SSE130 (SSE130Q) /CSM/SS/SSE1-B/SSE130Q.Seq.d/                        309   2e-83

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF310893|AF310893.1 Dictyostelium discoideum RacG (racG) gene, complete cds; and unknown genes.   646  0.0  3
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene.    50  3e-10  3
L11594|L11594.1 Slime mold RacD protein mRNA, complete cds.       42  1e-08  3
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    50  1e-08  4
L11589|L11589.1 Slime mold Rac1B protein mRNA, complete cds.      40  5e-07  3
AF037042|AF037042.2 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene, complete cds; tRNA-Glu gene, complete sequence; and unknown genes.    46  4e-06  2
BP186993|BP186993.1 Dugesia japonica cDNA, clone: 00806_HH, expressed in the head.    40  5e-06  3
BP186973|BP186973.1 Dugesia japonica cDNA, clone: 00825_HH, expressed in the head.    40  5e-06  3
AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.    48  1e-05  3
AF310884|AF310884.1 Dictyostelium discoideum Rac1B (rac1B) gene, complete cds; racK pseudogene, complete sequence; and unknown genes.    40  1e-05  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN079563_1(GN079563|pid:none) Sequence 166 from Patent WO2009027...   153   2e-36
(P40792) RecName: Full=Ras-related protein Rac1; Flags: Precurso...   152   4e-36
CS026539_1(CS026539|pid:none) Sequence 91 from Patent WO20050148...   152   4e-36
CS026565_1(CS026565|pid:none) Sequence 117 from Patent WO2005014...   152   4e-36
AY892146_1(AY892146|pid:none) Synthetic construct Homo sapiens c...   152   5e-36
AF174644_1(AF174644|pid:none) Xenopus laevis rac GTPase mRNA, co...   152   5e-36
AB074145_1(AB074145|pid:none) Synthetic construct gene for Raich...   152   5e-36
BT044876_1(BT044876|pid:none) Salmo salar clone ssal-rgf-506-106...   152   5e-36
BC135751_1(BC135751|pid:none) Xenopus tropicalis ras-related C3 ...   152   5e-36
CS026611_1(CS026611|pid:none) Sequence 163 from Patent WO2005014...   152   5e-36

 psg: 0.80  gvh: 0.49  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SSA135 is cyt

>SSA135F.Seq
AAAGAGATAAAATAAATTACTATAAATTAGTTGTGATATTAATTTTATTGTTAATTTGGA
AAATTTAATAAAAACAAATAAATAATAAATACCCCCACATTTTTAAAATTAAAATAATTA
ATCGATTAAAAAATGAAAAGTATTAAAGTTTGTGTTGTTGGCGAAGGTGGAATTGGTAAA
ACATCAATGTTATTAAGTTATACATCAAATTCAATTTCAAATGAATATCAACCAACAGTA
TTTGATAACTATTCAACTTTATTAATGCATAATAAAAAACCATATAATTTATCATTGTGG
GATACTGCAGGTCAAGAAGAGTTTAGTAAATTAAGAAGGTTAAGTTATCCTCAAACTGAT
GTATTTTTATTATGTTTTTCACTTATAAATCCATCATCATTTTCAAATATTTTAGATTCA
TGGGTACAAGAATTAAATGAAAATTGTCCAAATACTCCAATAGTTTTAGTTGGACTCAAA
TGGATTTAAAATCAAATTCAGTTATACTGGATAGACTATGTGAAAAAAAAA---------
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