>SSA134 (SSA134Q) /CSM/SS/SSA1-B/SSA134Q.Seq.d/
TTTTAGATGATAGGTCAGTTGAGTTTGACTATTTAGTGATAAACTCTGGCTCAAGTTATA
ATTCACCATTTAAAGAATCAAGTGTTGTCTCATCAGCACGTGCAAATACATTACGTGAAA
ATTATTACCACATTAGAAAGTTGAAGAGAATTTTAATCATTGGTGGTGGTATCGTTGGAG
TGGAGTTGGCCGCAGAGATAGTGGACCATTTCAAAGGCAAGGAAGTGACAATCGTGCATT
CACAATCGAAATTAATGAACAGGTTCCCCAAGAAGACAATACGTTACACTGAGGAATTCT
TACAAAAGCGTGGTGTTAAATTGATTTATAATGAACGTGTTGTGGCTCATAGGGGTCAAA
CATTCATAACCGATCAGGGTAGTGAGATCATTGCTGAGCAAGCGTTCCTTTGTACTGGTA
TCGCACCAAATTCAAATTTCATTAAAAACAGCTACCCCGGATGCCATCTCTGAGAATGGT
TACATCAAAGCTAACGACCAACTCCAGATGGCCGGCACTACATTCTATCGTAAATATCTT
TGTGTCTGGTGACGTCTTACATGTACGTGAAGAGAAGTTAGCCCAAACTGXXXXXXXXXX

LDDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRENYYHIRKLKRILIIGGGIVGV
ELAAEIVDHFKGKEVTIVHSQSKLMNRFPKKTIRYTEEFLQKRGVKLIYNERVVAHRGQT
FITDQGSEIIAEQAFLCTGIAPNSNFIKNSYPGCHL*ewlhqs*rptpdgrhyils*isl
clvtsymyvkrs*pk---

Frame A:
f*migqlslti***tlaqviihhlknqvlshqhvqihyvkiittles*ref*slvvvsle
wswpqr*wtiskark*qscihnrn**tgsprrqyvtlrnsyksvvln*fimnvlwligvk
hs*pirvvrsllskrsfvlvshqiqislktatpdaisengyikandqlqmagttfyrkyl
cvw*rltct*revspn---


Frame B:
fr**vs*v*lfsdklwlkl*fti*rikcclistckyit*kllph*kveenfnhwwwyrws
gvgrrdsgpfqrqgsdnraftieineqvpqedntlh*giltkawc*idl**tccgs*gsn
ihnrsg**dhc*asvplywyrtkfkfh*kqlprmpslrmvtsklttnsrwpalhsivnif
vsgdvlhvreeklaqt---


Frame C:
LDDRSVEFDYLVINSGSSYNSPFKESSVVSSARANTLRENYYHIRKLKRILIIGGGIVGV
ELAAEIVDHFKGKEVTIVHSQSKLMNRFPKKTIRYTEEFLQKRGVKLIYNERVVAHRGQT
FITDQGSEIIAEQAFLCTGIAPNSNFIKNSYPGCHL*ewlhqs*rptpdgrhyils*isl
clvtsymyvkrs*pk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA134 (SSA134Q) /CSM/SS/SSA1-B/SSA134Q.Seq.d/                       1170   0.0
SFH190 (SFH190Q) /CSM/SF/SFH1-D/SFH190Q.Seq.d/                       1138   0.0
SFE664 (SFE664Q) /CSM/SF/SFE6-C/SFE664Q.Seq.d/                       1138   0.0
AFE104 (AFE104Q) /CSM/AF/AFE1-A/AFE104Q.Seq.d/                       1138   0.0
AFD196 (AFD196Q) /CSM/AF/AFD1-D/AFD196Q.Seq.d/                       1138   0.0
VFJ609 (VFJ609Q) /CSM/VF/VFJ6-A/VFJ609Q.Seq.d/                       1130   0.0
CFI602 (CFI602Q) /CSM/CF/CFI6-A/CFI602Q.Seq.d/                       1124   0.0
SFF118 (SFF118Q) /CSM/SF/SFF1-A/SFF118Q.Seq.d/                       1120   0.0
AFA682 (AFA682Q) /CSM/AF/AFA6-D/AFA682Q.Seq.d/                        967   0.0
SSJ215 (SSJ215Q) /CSM/SS/SSJ2-A/SSJ215Q.Seq.d/                        884   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL034560|AL034560.3 Plasmodium falciparum MAL3P8.                 44  1.3  3
AU273878|AU273878.1 Hemicentrotus pulcherrimus mRNA, clone:001b02r_B08, 5' end, single read.    44  1.9  1
U67542|U67542.1 Methanococcus jannaschii section 84 of 150 of the complete genome.    38  3.5  3
AE010592|AE010592.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 134 of 197 of the complete genome.    42  7.6  1
CC267743|CC267743.1 CH261-184O17_Sp6.1 CH261 Gallus gallus genomic clone CH261-184O17, DNA sequence.    42  7.6  1
AL353012|AL353012.1 S.pombe chromosome II cosmid c1711.           42  7.6  1
AX458634|AX458634.1 Sequence 180 from Patent WO0246454.           42  7.6  1
AX346461|AX346461.1 Sequence 1532 from Patent WO0200928.          42  7.6  1
CD508664|CD508664.1 CDA92-B03.x1d-t SHGC-CDA Gasterosteus aculeatus cDNA clone CDA92-B03 5', mRNA sequence.    42  7.6  1
AC096877|AC096877.2 Pan troglodytes clone RP43-146I8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    38  8.0  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BRQ8) RecName: Full=Apoptosis-inducing factor 2;          EC=...    55   1e-06
AP007161_561(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    55   2e-06
CP000439_1350(CP000439|pid:none) Francisella tularensis subsp. n...    54   2e-06
AJ749949_1425(AJ749949|pid:none) Francisella tularensis subsp. t...    54   2e-06
BC167890_1(BC167890|pid:none) Xenopus tropicalis cDNA clone MGC:...    50   6e-06
BT021162_1(BT021162|pid:none) Bos taurus apoptosis-inducing fact...    53   7e-06
AJ893356_35(AJ893356|pid:none) Phytophthora infestans, clone PI-...    52   1e-05
(Q54NS8) RecName: Full=Apoptosis-inducing factor homolog B;     ...    52   1e-05
AM233362_635(AM233362|pid:none) Francisella tularensis subsp. ho...    52   1e-05
CU633873_161(CU633873|pid:none) Podospora anserina genomic DNA c...    48   3e-05

 psg: 0.75  gvh: 0.42  alm: 0.29  top: 0.13  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.60  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.40  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 24.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for SSA134 is mit

>SSA134F.Seq
TTTTAGATGATAGGTCAGTTGAGTTTGACTATTTAGTGATAAACTCTGGCTCAAGTTATA
ATTCACCATTTAAAGAATCAAGTGTTGTCTCATCAGCACGTGCAAATACATTACGTGAAA
ATTATTACCACATTAGAAAGTTGAAGAGAATTTTAATCATTGGTGGTGGTATCGTTGGAG
TGGAGTTGGCCGCAGAGATAGTGGACCATTTCAAAGGCAAGGAAGTGACAATCGTGCATT
CACAATCGAAATTAATGAACAGGTTCCCCAAGAAGACAATACGTTACACTGAGGAATTCT
TACAAAAGCGTGGTGTTAAATTGATTTATAATGAACGTGTTGTGGCTCATAGGGGTCAAA
CATTCATAACCGATCAGGGTAGTGAGATCATTGCTGAGCAAGCGTTCCTTTGTACTGGTA
TCGCACCAAATTCAAATTTCATTAAAAACAGCTACCCCGGATGCCATCTCTGAGAATGGT
TACATCAAAGCTAACGACCAACTCCAGATGGCCGGCACTACATTCTATCGTAAATATCTT
TGTGTCTGGTGACGTCTTACATGTACGTGAAGAGAAGTTAGCCCAAACTG----------