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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA132
Library SS
(Link to library)
Clone ID SSA132
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSA132F
(Link to Original site)
Representative DNA sequence 
>SSA132 (SSA132Q) /CSM/SS/SSA1-B/SSA132Q.Seq.d/
CTTTAATCAAATGACATCAGGCGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCC
AATAAACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGA
TCTCCGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAA
ATCTTTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTG
ATAAGATCTGTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXX
X
sequence update 1998. 3. 6
Translated Amino Acid sequence 
FNQMTSGGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqk
slfnaknsryllyflil*i**dls*ikkikffyklkkkkkkkkkkkkkkkkkkkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
l*sndirrnrttrpkslttsnkrpiwlgtssrkcrkstwrspwlhlqy*ivslsiseyse
ifv*cqk**isiifshfinlirsvlnkknqifl*ikkkkkkkkkkkkkkkkkkkkk---


Frame B:
FNQMTSGGIVQPGQNLSQRPINGQYGWGPAAGSAANPRGDLRGYTYNIR*frclflniqk
slfnaknsryllyflil*i**dls*ikkikffyklkkkkkkkkkkkkkkkkkkkkk---


Frame C:
lik*hqaesynqakishnvq*tanmagdqqqevpqihvaisvvtltildsfavyf*ifrn
lclmpkivdiyyifsfyksdkiclk*kksnffin*kkkkkkkkkkkkkkkkkkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA180 (VSA180Q) /CSM/VS/VSA1-D/VSA180Q.Seq.d/                        517   e-146
SSM270 (SSM270Q) /CSM/SS/SSM2-C/SSM270Q.Seq.d/                        517   e-146
SSL844 (SSL844Q) /CSM/SS/SSL8-B/SSL844Q.Seq.d/                        517   e-146
SSL327 (SSL327Q) /CSM/SS/SSL3-B/SSL327Q.Seq.d/                        517   e-146
SSH532 (SSH532Q) /CSM/SS/SSH5-B/SSH532Q.Seq.d/                        517   e-146
SSC787 (SSC787Q) /CSM/SS/SSC7-D/SSC787Q.Seq.d/                        517   e-146
SSA132 (SSA132Q) /CSM/SS/SSA1-B/SSA132Q.Seq.d/                        517   e-146
SHI646 (SHI646Q) /CSM/SH/SHI6-B/SHI646Q.Seq.d/                        517   e-146
SHA757 (SHA757Q) /CSM/SH/SHA7-C/SHA757Q.Seq.d/                        517   e-146
AHP705 (AHP705Q) /CSM/AH/AHP7-A/AHP705Q.Seq.d/                        517   e-146
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.   498  e-139  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   490  e-136  2
AC108886|AC108886.2 Rattus norvegicus clone RP31-392N9 strain Brown Norway, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.11  2
AC129135|AC129135.4 Rattus norvegicus clone CH230-23C19, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  0.15  2
AQ112874|AQ112874.1 CIT-HSP-2376G2.TR CIT-HSP Homo sapiens genomic clone 2376G2, DNA sequence.    46  0.29  1
AC121604|AC121604.2 Mus musculus chromosome UNK clone RP23-312E2, WORKING DRAFT SEQUENCE, 3 unordered pieces.    50  0.51  2
AC140217|AC140217.1 Mus musculus chromosome UNK clone RP23-279O5, WORKING DRAFT SEQUENCE, 14 unordered pieces.    50  0.67  2
AC097583|AC097583.2 Rattus norvegicus clone RP31-409E6 strain Brown Norway, WORKING DRAFT SEQUENCE, 10 ordered pieces.    44  1.1  1
AC121674|AC121674.4 Rattus norvegicus clone CH230-265A12, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.1  1
AC094585|AC094585.6 Rattus norvegicus clone CH230-4B10, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.1  1
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_51(AC116957|pid:none) Dictyostelium discoideum chromoso...   101   9e-21
protein update 2009. 1.26
PSORT 

 psg: 0.85  gvh: 0.35  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA132 is cyt
5' end seq. ID SSA132F
5' end seq. 
>SSA132F.Seq
CTTTAATCAAATGACATCAGGCGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCC
AATAAACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGA
TCTCCGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAA
ATCTTTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCTG
ATAAGATCTGTCTTAAATAAAAAAAATCAAATTTTTTTATAAATTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------
-
Length of 5' end seq. 351
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -