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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA130
Library SS
(Link to library)
Clone ID SSA130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14356-1
Original site URL
Representative seq. ID SSA130P
(Link to Original site)
Representative DNA sequence 
>SSA130 (SSA130Q) /CSM/SS/SSA1-B/SSA130Q.Seq.d/
TTTTTTTTTTTTTTTAATTTATTACAAGTGATCCATTTTTATTTTTTTTATCTTATTTGT
TATGATTGTTTCTTTTTTTTTTTTAAATTATTGAAATTGATTTAGTGTGTTTTTTTTTTT
TTTTTTGTTTTTATAATTCATTAAACTATAAATACATATTTTTTTTTTTTTTTTTTTTTT
TTTTNAAAAATNANAAAATTTTGGATNAAAAATNATTNAAAAAAAATTTAAGCAGAAACA
CCACAAGCAAANGCCATTGGNGGAAAAGNTNCCAAACCAATNAAAGNGACAGCTTNGGCA
TTTNCCCCXXXXXXXXXXGTAACATGATGCATCTGGATTGACAAAAGCGAATCCACCACT
GATAAAGAATTTCTCCAAGTCACCGTTTTCGTGATTGATTTGAATAACGCCTGGTTTGAG
TTCAGCAATTCTTGGAACGTGGTTTTTGGCAACACCAAAAATACCTTTAGCACCTGGAAG
TGTAACTAATTGTGCTTTCTTATCTTTATAGATGGTTTGGTGTGGTGATAATAATGAAAA
AGTTAATAAATCACTGGTGGCTGATGCTTCAGTGGCAAAAAATCTTTTATTACTATTGAT
AGCAACGTTTGATTTTAATAAATTGTTGCTTGATTTAATAATTGATCTGATCATTCTTTG
TTATTGACGTTTTTTTATATGAGTTGAATAATGAACTCGAATTTTATGCTATGTTTCAAA
AAAAAAAAAAAAAAAAAAATT
sequence update 1998. 7.31
Translated Amino Acid sequence 
ffff*fitsdpflfflsyll*lflfff*IIEIDLVCFFFFFCFYNSLNYKYIFFFFFFFF
XKNXKILDXKXXKKNLSRNTTSKXHWXKXXQTNXXDSXGIXP---

---NMMHLD*qkrihh**rispshrfrd*fe*rlv*vqqflergfwqhqkyl*hlev*li
vlsylyrwfgvviimkklinhwwlmlqwqkifyyy**qrlilinccli**li*sffvidv
flyelnnelefyamfqkkkkkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
fffffnllqvihfyffylicydcfffffkllkli*cvfffffvfiih*tintyfffffff
fxkxxkfwxknxxkki*aetpqaxaiggkxxkpxkxtaxafx---

---vt*ciwidksesttdkeflqvtvfvidlnnawfefsnswnvvfgntkntfstwkcn*
lcflifidglvw****ks**itgg*cfsgkksfitidsnv*f**iva*fnn*sdhslllt
ffyms*imnsnfmlcfkkkkkkki

Frame B:
ffffliyyk*sififfilfvmivsffflny*n*fsvffffflfl*fikl*ihifffffff
fxkxxnfgxkxixkkfkqkhhkqxplxekxpnqxkxqlxhxp---

---*hdasgltkanppliknfskspfs*li*itpglssailgtwflatpkiplapgsvtn
caflsl*mvwcgdnnekvnkslvadasvaknllllliatfdfnkllldliidliilcy*r
ffi*ve**trilcyvskkkkkkk

Frame C:
ffff*fitsdpflfflsyll*lflfff*IIEIDLVCFFFFFCFYNSLNYKYIFFFFFFFF
XKNXKILDXKXXKKNLSRNTTSKXHWXKXXQTNXXDSXGIXP---

---NMMHLD*qkrihh**rispshrfrd*fe*rlv*vqqflergfwqhqkyl*hlev*li
vlsylyrwfgvviimkklinhwwlmlqwqkifyyy**qrlilinccli**li*sffvidv
flyelnnelefyamfqkkkkkkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA130 (SSA130Q) /CSM/SS/SSA1-B/SSA130Q.Seq.d/                        829   0.0
SSK361 (SSK361Q) /CSM/SS/SSK3-C/SSK361Q.Seq.d/                        720   0.0
SSG545 (SSG545Q) /CSM/SS/SSG5-B/SSG545Q.Seq.d/                        714   0.0
SSG537 (SSG537Q) /CSM/SS/SSG5-B/SSG537Q.Seq.d/                        714   0.0
SSB438 (SSB438Q) /CSM/SS/SSB4-B/SSB438Q.Seq.d/                        696   0.0
VSI673 (VSI673Q) /CSM/VS/VSI6-D/VSI673Q.Seq.d/                        694   0.0
VSI102 (VSI102Q) /CSM/VS/VSI1-A/VSI102Q.Seq.d/                        690   0.0
VSD220 (VSD220Q) /CSM/VS/VSD2-A/VSD220Q.Seq.d/                        650   0.0
SSM538 (SSM538Q) /CSM/SS/SSM5-B/SSM538Q.Seq.d/                        531   e-150
SSJ416 (SSJ416Q) /CSM/SS/SSJ4-A/SSJ416Q.Seq.d/                        434   e-121
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX004880|BX004880.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.15  1
BX187252|BX187252.1 Danio rerio genomic clone DKEY-188C20, genomic survey sequence.    48  0.15  1
W23355|W23355.1 SWAMCA503SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCA503 5', mRNA sequence.    38  1.4  2
CC761759|CC761759.1 CH240_1G3.TJ CHORI-240 Bos taurus genomic clone CH240_1G3, genomic survey sequence.    44  2.4  1
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    34  4.4  6
AI083356|AI083356.1 SWAMCAC19H12SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCAC19H12 5', mRNA sequence.    38  5.3  2
W00309|W00309.1 RRAMCA1120SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone RRAMCA1120 5', mRNA sequence.    38  5.4  2
AF362372|AF362372.2 Dictyostelium discoideum histidine kinase DhkJ (dhkJ) gene, complete cds.    40  5.4  2
AI083250|AI083250.1 SWAMCAC19F06SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCAC10F06 5', mRNA sequence.    38  5.4  2
AW466303|AW466303.1 SWAMCAC21G05SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCAC21G05 5', mRNA sequence.    38  5.5  2
dna update 2003. 7.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN392319_1235(FN392319|pid:none) Pichia pastoris GS115 chromosom...    91   4e-17
CR382133_594(CR382133|pid:none) Debaryomyces hansenii strain CBS...    83   8e-15
AM920437_2565(AM920437|pid:none) Penicillium chrysogenum Wiscons...    82   1e-14
AM269964_10(AM269964|pid:none) Aspergillus niger contig An01c017...    81   3e-14
CP000589_61(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    73   1e-11
CR380949_179(CR380949|pid:none) Candida glabrata strain CBS138 c...    69   2e-10
U88046_1(U88046|pid:none) Kluyveromyces lactis ATP synthase F1 d...    68   3e-10
(Q9P6R6) RecName: Full=ATP synthase subunit delta, mitochondrial...    67   4e-10
CP001332_192(CP001332|pid:none) Micromonas sp. RCC299 chromosome...    67   8e-10
BT050088_1(BT050088|pid:none) Salmo salar clone ssal-evd-546-102...    66   1e-09
protein update 2009. 6. 7
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.31  top: 0.73  tms: 0.07  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSA130 is nuc
5' end seq. ID SSA130F
5' end seq. 
>SSA130F.Seq
TTTTTTTTTTTTTTTAATTTATTACAAGTGATCCATTTTTATTTTTTTTATCTTATTTGT
TATGATTGTTTCTTTTTTTTTTTTAAATTATTGAAATTGATTTAGTGTGTTTTTTTTTTT
TTTTTTGTTTTTATAATTCATTAAACTATAAATACATATTTTTTTTTTTTTTTTTTTTTT
TTTTNAAAAATNANAAAATTTTGGATNAAAAATNATTNAAAAAAAATTTAAGCAGAAACA
CCACAAGCAAANGCCATTGGNGGAAAAGNTNCCAAACCAATNAAAGNGACAGCTTNGGCA
TTTNCCCC----------
Length of 5' end seq. 308
3' end seq. ID SSA130Z
3' end seq. 
>SSA130Z.Seq
----------GTAACATGATGCATCTGGATTGACAAAAGCGAATCCACCACTGATAAAGA
ATTTCTCCAAGTCACCGTTTTCGTGATTGATTTGAATAACGCCTGGTTTGAGTTCAGCAA
TTCTTGGAACGTGGTTTTTGGCAACACCAAAAATACCTTTAGCACCTGGAAGTGTAACTA
ATTGTGCTTTCTTATCTTTATAGATGGTTTGGTGTGGTGATAATAATGAAAAAGTTAATA
AATCACTGGTGGCTGATGCTTCAGTGGCAAAAAATCTTTTATTACTATTGATAGCAACGT
TTGATTTTAATAAATTGTTGCTTGATTTAATAATTGATCTGATCATTCTTTGTTATTGAC
GTTTTTTTATATGAGTTGAATAATGAACTCGAATTTTATGCTATGTTTCAAAAAAAAAAA
AAAAAAAAAAATT
Length of 3' end seq. 423
Connected seq. ID SSA130P
Connected seq. 
>SSA130P.Seq
TTTTTTTTTTTTTTTAATTTATTACAAGTGATCCATTTTTATTTTTTTTATCTTATTTGT
TATGATTGTTTCTTTTTTTTTTTTAAATTATTGAAATTGATTTAGTGTGTTTTTTTTTTT
TTTTTTGTTTTTATAATTCATTAAACTATAAATACATATTTTTTTTTTTTTTTTTTTTTT
TTTTNAAAAATNANAAAATTTTGGATNAAAAATNATTNAAAAAAAATTTAAGCAGAAACA
CCACAAGCAAANGCCATTGGNGGAAAAGNTNCCAAACCAATNAAAGNGACAGCTTNGGCA
TTTNCCCC----------GTAACATGATGCATCTGGATTGACAAAAGCGAATCCACCACT
GATAAAGAATTTCTCCAAGTCACCGTTTTCGTGATTGATTTGAATAACGCCTGGTTTGAG
TTCAGCAATTCTTGGAACGTGGTTTTTGGCAACACCAAAAATACCTTTAGCACCTGGAAG
TGTAACTAATTGTGCTTTCTTATCTTTATAGATGGTTTGGTGTGGTGATAATAATGAAAA
AGTTAATAAATCACTGGTGGCTGATGCTTCAGTGGCAAAAAATCTTTTATTACTATTGAT
AGCAACGTTTGATTTTAATAAATTGTTGCTTGATTTAATAATTGATCTGATCATTCTTTG
TTATTGACGTTTTTTTATATGAGTTGAATAATGAACTCGAATTTTATGCTATGTTTCAAA
AAAAAAAAAAAAAAAAAAATT
Length of connected seq. 731
Full length Seq ID -
Full length Seq. -
Length of full length seq. -