>SSA118 (SSA118Q) /CSM/SS/SSA1-A/SSA118Q.Seq.d/
CGGACGCTGGTNGNTCGTCTCAAATTGGTATTTCTCACGTGACCCAACTGGTAAATCATT
GGTTGGTCAAGAGAATGCCTATCGTTCATTGGGTAGAGCTTNGAGTACAAGTTTTGGTTC
ATTAGCATTTGGTTCATTACTCATTGCTTTTATCGAATTTATGGCATTCATGTTACGTGT
CTGTAAGAACAGTAACGCTACCAACAAATTGGTTGTAATGGTAGTATCTTGTCTTCAATG
TATTTTGGGTTGTATTGAATCAATCGTTCGTTGGATCAACAAATTTGGTTACATCTACGT
AGCAATGCATGGTCATTCATTCTGTACCTCAACAAAGGAATGTTTCGATCTCATCTCTAG
AAATATGTTCAATGCTGTCATTATGGATTTCATTGGTGGTTTGGTTTTATTATTAGGTAA
GATTTTGGGTTCAGCTGCTTCTGCTCTCTTCACCACTGCACTCTTGTATGGTATGGGTAA
ATCTCTCAATCCAATCACTATTGCTCTCTCTGCAATTTTCGCTTTTTGTATCTTCAATCT
TTTCACTCATATCGTTGGTATTGGTACAGACACAAXXXXXXXXXX

GRWXXVSNWYFSRDPTGKSLVGQENAYRSLGRAXSTSFGSLAFGSLLIAFIEFMAFMLRV
CKNSNATNKLVVMVVSCLQCILGCIESIVRWINKFGYIYVAMHGHSFCTSTKECFDLISR
NMFNAVIMDFIGGLVLLLGKILGSAASALFTTALLYGMGKSLNPITIALSAIFAFCIFNL
FTHIVGIGTDT---

Frame A:
rtlvxrlklvflt*pnw*iigwsreclsfig*sxeykfwfisiwfithcfyriygihvtc
l*eq*ryqqigcngsilssmyfgly*inrsldqqiwlhlrsnawsfilylnkgmfrshl*
kyvqcchygfhwwfgfiir*dfgfscfcslhhctlvwyg*isqsnhycslcnfrflylqs
fhsyrwywyrh---


Frame B:
GRWXXVSNWYFSRDPTGKSLVGQENAYRSLGRAXSTSFGSLAFGSLLIAFIEFMAFMLRV
CKNSNATNKLVVMVVSCLQCILGCIESIVRWINKFGYIYVAMHGHSFCTSTKECFDLISR
NMFNAVIMDFIGGLVLLLGKILGSAASALFTTALLYGMGKSLNPITIALSAIFAFCIFNL
FTHIVGIGTDT---


Frame C:
dagxssqigishvtqlvnhwlvkrmpivhwvelxvqvlvh*hlvhyslllsnlwhscyvs
vrtvtlptnwl*w*ylvfnvfwvvlnqsfvgstnlvtst*qcmvihsvpqqrnvsissle
icsmlslwislvvwfyy*vrfwvqllllssplhscmvwvnlsiqslllslqfslfvssif
slislvlvqt---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA118 (SSA118Q) /CSM/SS/SSA1-A/SSA118Q.Seq.d/                       1122   0.0
AFK551 (AFK551Q) /CSM/AF/AFK5-C/AFK551Q.Seq.d/                       1023   0.0
AFN286 (AFN286Q) /CSM/AF/AFN2-D/AFN286Q.Seq.d/                       1009   0.0
VFE209 (VFE209Q) /CSM/VF/VFE2-A/VFE209Q.Seq.d/                        993   0.0
AFG833 (AFG833Q) /CSM/AF/AFG8-B/AFG833Q.Seq.d/                        979   0.0
SFE605 (SFE605Q) /CSM/SF/SFE6-A/SFE605Q.Seq.d/                        904   0.0
VFD391 (VFD391Q) /CSM/VF/VFD3-D/VFD391Q.Seq.d/                        868   0.0
SSD161 (SSD161Q) /CSM/SS/SSD1-C/SSD161Q.Seq.d/                        852   0.0
SSC258 (SSC258Q) /CSM/SS/SSC2-C/SSC258Q.Seq.d/                        825   0.0
VSI877 (VSI877Q) /CSM/VS/VSI8-D/VSI877Q.Seq.d/                        815   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC103055|AC103055.6 Rattus norvegicus clone CH230-158G20, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36  0.50  4
AC111045|AC111045.3 Mus musculus clone RP23-457J17, WORKING DRAFT SEQUENCE, 15 ordered pieces.    38  0.75  4
AC121655|AC121655.4 Rattus norvegicus clone CH230-301K18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  1.2  5
BE881198|BE881198.1 601492071F1 NIH_MGC_69 Homo sapiens cDNA clone IMAGE:3894353 5', mRNA sequence.    44  1.9  1
AC132094|AC132094.3 Mus musculus chromosome 3 clone RP24-376B20, complete sequence.    38  3.0  2
AC115840|AC115840.4 Mus musculus clone RP24-230J5, WORKING DRAFT SEQUENCE, 3 ordered pieces.    42  4.1  2
AC112044|AC112044.4 Rattus norvegicus clone CH230-89P21, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    42  4.4  5
AC131646|AC131646.4 Rattus norvegicus clone CH230-9B6, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38  4.6  5
AC096485|AC096485.6 Rattus norvegicus clone CH230-125F24, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  5.2  4
AC117854|AC117854.4 Rattus norvegicus clone CH230-158L11, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  5.3  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54IJ2) RecName: Full=CTL-like protein DDB_G0288717;                 317   1e-85
(B5X3W7) RecName: Full=Choline transporter-like protein 2; AltNa...    85   2e-15
BT059118_1(BT059118|pid:none) Salmo salar clone ssal-rgf-526-146...    84   4e-15
(Q6IP59) RecName: Full=Choline transporter-like protein 2; AltNa...    83   5e-15
(Q7SYC9) RecName: Full=Choline transporter-like protein 2; AltNa...    83   5e-15
(A5D7H3) RecName: Full=Choline transporter-like protein 2; AltNa...    81   2e-14
(Q8BY89) RecName: Full=Choline transporter-like protein 2; AltNa...    80   5e-14
(B4F795) RecName: Full=Choline transporter-like protein 2; AltNa...    80   5e-14
(Q810F1) RecName: Full=Choline transporter-like protein 2; AltNa...    79   7e-14
AB070052_1(AB070052|pid:none) Macaca fascicularis testis cDNA cl...    79   9e-14

 psg: 0.79  gvh: 0.52  alm: 0.24  top: 0.47  tms: 0.27  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  4.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for SSA118 is end

>SSA118F.Seq
CGGACGCTGGTNGNTCGTCTCAAATTGGTATTTCTCACGTGACCCAACTGGTAAATCATT
GGTTGGTCAAGAGAATGCCTATCGTTCATTGGGTAGAGCTTNGAGTACAAGTTTTGGTTC
ATTAGCATTTGGTTCATTACTCATTGCTTTTATCGAATTTATGGCATTCATGTTACGTGT
CTGTAAGAACAGTAACGCTACCAACAAATTGGTTGTAATGGTAGTATCTTGTCTTCAATG
TATTTTGGGTTGTATTGAATCAATCGTTCGTTGGATCAACAAATTTGGTTACATCTACGT
AGCAATGCATGGTCATTCATTCTGTACCTCAACAAAGGAATGTTTCGATCTCATCTCTAG
AAATATGTTCAATGCTGTCATTATGGATTTCATTGGTGGTTTGGTTTTATTATTAGGTAA
GATTTTGGGTTCAGCTGCTTCTGCTCTCTTCACCACTGCACTCTTGTATGGTATGGGTAA
ATCTCTCAATCCAATCACTATTGCTCTCTCTGCAATTTTCGCTTTTTGTATCTTCAATCT
TTTCACTCATATCGTTGGTATTGGTACAGACACAA----------