NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA112
Library SS
(Link to library)
Clone ID SSA112
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04308-1
Original site URL
Representative seq. ID SSA112E
(Link to Original site)
Representative DNA sequence 
>SSA112 (SSA112Q) /CSM/SS/SSA1-A/SSA112Q.Seq.d/
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAATTTTACTTGGT
AAAGCCGATAAAAACTCAATTTTAATTACAGATATAATACCACTTTTTCATACACAAACT
TTATTACCGATGTTTGAAGTTGCAATGATTCAGATTGAAAAATATTGTAGAGATAATAAT
ATAGATATGGTTGGATATTATCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAA
CCAATAGCTAAAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGT
TCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCGATACAACCTCAAATAGTGAA
GATATTAATGAAATCTTAAAAAGAAATTTACAAAATATAAAAGAATCTCAAATTTATGAT
TTTGAGGAATATCTTTCAAATCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAA
TAAAGCCATATTTATATTTTTAAATTANAAAAAAAAAAAAAAAAA
sequence update 1999. 1.22
Translated Amino Acid sequence 
KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN
IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG
SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL*
*shiyifklxkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KAHLHSFKHHASSVNGILLGKADKNSILITDIIPLFHTQTLLPMFEVAMIQIEKYCRDNN
IDMVGYYHSNQCIANELEPEPIAKKIADRLNNELNNMCFLMISKIEVNRPSGLVSIDKVG
SDWLKNRKTLITIDTTSNSEDINEILKRNLQNIKESQIYDFEEYLSNPTRDWLNKSLVL*
*shiyifklxkkkkk


Frame B:
kliyihlnimhhqlmefylvkpiktqf*lqi*yhffihklyyrclklq*frlkniveiii
*iwldiiiqinv*qtn*nlnq*lkkllid*tmn*iicaf**fqrlk*ivqvv*fpliklv
lig*kiekh*lqsiqpqivkilmks*keiyki*knlkfmilrnifqiqlvig*inh*fyn
kaififlnxkkkkk


Frame C:
ssftfi*tsciis*wnftw*sr*klnfnyrynttfsytnfitdv*scndsd*kil*r**y
rygwilsfksmyskrirt*tns*knc**ikq*ik*yvlfndfkd*sksskwfsfh**swf
*lvkk*kninynrynlk**ry**nlkkkftkykrisnl*f*gisfksns*lvk*iisfii
kpylyf*ixkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA112 (SSA112Q) /CSM/SS/SSA1-A/SSA112Q.Seq.d/                       1082   0.0
VSE406 (VSE406Q) /CSM/VS/VSE4-A/VSE406Q.Seq.d/                        981   0.0
SSM206 (SSM206Q) /CSM/SS/SSM2-A/SSM206Q.Seq.d/                         42   0.009
VSI137 (VSI137Q) /CSM/VS/VSI1-B/VSI137Q.Seq.d/                         38   0.15
VHQ239 (VHQ239Q) /CSM/VH/VHQ2-B/VHQ239Q.Seq.d/                         38   0.15
VHO416 (VHO416Q) /CSM/VH/VHO4-A/VHO416Q.Seq.d/                         38   0.15
VHL452 (VHL452Q) /CSM/VH/VHL4-C/VHL452Q.Seq.d/                         38   0.15
VHB145 (VHB145Q) /CSM/VH/VHB1-B/VHB145Q.Seq.d/                         38   0.15
VHD278 (VHD278Q) /CSM/VH/VHD2-D/VHD278Q.Seq.d/                         36   0.58
SLF349 (SLF349Q) /CSM/SL/SLF3-C/SLF349Q.Seq.d/                         36   0.58
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    32  0.002  12
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    40  0.004  8
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          44  0.006  11
AE015938|AE015938.1 Clostridium tetani E88, section 3 of 10 of the complete genome.    40  0.007  8
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    32  0.024  10
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34  0.081  6
AC002347|AC002347.3 Homo sapiens chromosome 17, clone CTC-297N7, complete sequence.    40  0.082  5
AC116783|AC116783.4 Mus musculus clone RP24-145D9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    48  0.12  1
AC118081|AC118081.5 Rattus norvegicus clone CH230-365E12, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48  0.12  1
AC127560|AC127560.4 Mus musculus chromosome 5 clone RP24-267I18, complete sequence.    48  0.12  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FM0) RecName: Full=UPF0172 protein;                               362   3e-99
FN357398_2(FN357398|pid:none) Schistosoma mansoni genome sequenc...    95   2e-18
BT073196_1(BT073196|pid:none) Oncorhynchus mykiss clone omyk-evn...    94   3e-18
BT073338_1(BT073338|pid:none) Oncorhynchus mykiss clone omyk-evn...    94   3e-18
BT079754_1(BT079754|pid:none) Esox lucius clone eluc-evq-509-171...    94   4e-18
BT048988_1(BT048988|pid:none) Salmo salar clone ssal-evf-502-190...    92   1e-17
BT050131_1(BT050131|pid:none) Salmo salar clone ssal-sjb-009-329...    91   2e-17
BT075540_1(BT075540|pid:none) Osmerus mordax clone omor-eva-512-...    89   9e-17
BC042318_1(BC042318|pid:none) Danio rerio zgc:55317, mRNA (cDNA ...    89   9e-17
DQ444286_1(DQ444286|pid:none) Salicornia bigelovii putative CPF ...    89   9e-17
protein update 2009. 7. 5
PSORT 

 psg: 0.85  gvh: 0.39  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSA112 is cyt
5' end seq. ID SSA112F
5' end seq. 
>SSA112F.Seq
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAATTTTACTTGGT
AAAGCCGATAAAAACTCAATTTTAATTACAGATATAATACCACTTTTTCATACACAAACT
TTATTACCGATGTTTGAAGTTGCAATGATTCAGATTGAAAAATATTGTAGAGATAATAAT
ATAGATATGGTTGGATATTATCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAA
CCAATAGCTAAAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGT
TCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCGATACAACCTCAAATAGTGAA
GATATTAATGAAATCTTAAAAAGAAATTTACAAAATATAAAAGAATCTCAAATTTATGAT
TTTGAGGAATATCTTTCAAATCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAA
TAAAGCCATATTTATATTTTTAAATTAG----------
Length of 5' end seq. 568
3' end seq. ID SSA112Z
3' end seq. 
>SSA112Z.Seq
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAATTTTACTTGGT
AAAGCCGATAAAAACTCAATTTTAATTACAGATATAATACCACTTTTTCATACACAAACT
TTATTACCGATGTTTGAAGTTGCAATGATTCAGATTGAAAAATATTGTAGAGATAATAAT
ATAGATATGGTTGGATATTATCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAA
CCAATAGCTAAAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGT
TCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCGATACAACCTCAAATAGTGAA
GATATTAATGAAATCTTAAAAAGAAATTTACAAAATATAAAAGAATCTCAAATTTATGAT
TTTGAGGAATATCTTTCAAATCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAA
TAAAGCCATATTTATATTTTTAAATTAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 585
Connected seq. ID SSA112P
Connected seq. 
>SSA112P.Seq
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAATTTTACTTGGT
AAAGCCGATAAAAACTCAATTTTAATTACAGATATAATACCACTTTTTCATACACAAACT
TTATTACCGATGTTTGAAGTTGCAATGATTCAGATTGAAAAATATTGTAGAGATAATAAT
ATAGATATGGTTGGATATTATCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAA
CCAATAGCTAAAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGT
TCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCGATACAACCTCAAATAGTGAA
GATATTAATGAAATCTTAAAAAGAAATTTACAAAATATAAAAGAATCTCAAATTTATGAT
TTTGAGGAATATCTTTCAAATCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAA
TAAAGCCATATTTATATTTTTAAATTAG----------AAAGCTCATTTACATTCATTTA
AACATCATGCATCATCAGTTAATGGAATTTTACTTGGTAAAGCCGATAAAAACTCAATTT
TAATTACAGATATAATACCACTTTTTCATACACAAACTTTATTACCGATGTTTGAAGTTG
CAATGATTCAGATTGAAAAATATTGTAGAGATAATAATATAGATATGGTTGGATATTATC
ATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAACCAATAGCTAAAAAAATTGCTG
ATAGATTAAACAATGAATTAAATAATATGTGCTTTTTAATGATTTCAAAGATTGAAGTAA
ATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGTTCTGATTGGTTAAAAAATAGAA
AAACATTAATTACAATCGATACAACCTCAAATAGTGAAGATATTAATGAAATCTTAAAAA
GAAATTTACAAAATATAAAAGAATCTCAAATTTATGATTTTGAGGAATATCTTTCAAATC
CAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAATAAAGCCATATTTATATTTTTA
AATTAAAAAAAAAAAAAAAAAAA
Length of connected seq. 1153
Full length Seq ID SSA112E
Full length Seq. 
>SSA112E.Seq
AAAGCTCATTTACATTCATTTAAACATCATGCATCATCAGTTAATGGAATTTTACTTGGT
AAAGCCGATAAAAACTCAATTTTAATTACAGATATAATACCACTTTTTCATACACAAACT
TTATTACCGATGTTTGAAGTTGCAATGATTCAGATTGAAAAATATTGTAGAGATAATAAT
ATAGATATGGTTGGATATTATCATTCAAATCAATGTATAGCAAACGAATTAGAACCTGAA
CCAATAGCTAAAAAAATTGCTGATAGATTAAACAATGAATTAAATAATATGTGCTTTTTA
ATGATTTCAAAGATTGAAGTAAATCGTCCAAGTGGTTTAGTTTCCATTGATAAAGTTGGT
TCTGATTGGTTAAAAAATAGAAAAACATTAATTACAATCGATACAACCTCAAATAGTGAA
GATATTAATGAAATCTTAAAAAGAAATTTACAAAATATAAAAGAATCTCAAATTTATGAT
TTTGAGGAATATCTTTCAAATCCAACTCGTGATTGGTTAAATAAATCATTAGTTTTATAA
TAAAGCCATATTTATATTTTTAAATTANAAAAAAAAAAAAAAAAA
Length of full length seq. 585