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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA109
Library SS
(Link to library)
Clone ID SSA109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01494-1|Contig-U15574-1
Original site URL
Representative seq. ID SSA109P
(Link to Original site)
Representative DNA sequence 
>SSA109 (SSA109Q) /CSM/SS/SSA1-A/SSA109Q.Seq.d/
ATGATTAATATATTAAAGGACATTCTTTATAAATCATATAGCTATTTAGCATTTCCTTTT
TTTTATTTGGGTTGGGCAATAAAAAACTCTTATCAACCTAATAAAACTATAAAAGAAGAA
GAATCAAAACCACCCAAAATATCCAAAAGAATGGAGTGATTTATTTATCCATTCTTATAA
TAATGAACATGAAAAAGTTTTAGAAATAATTCAAAAGGAACCAAATAGTATAAATTCAGT
AGATTCATTAAATTGGACACCTTTACATGTTGCTGTTTCAAATAAATCAATTGCAAGTTG
TTACTTTXXXXXXXXXXGTTCATTCGATCAATGGTATTGTACAGTTTGTCAAAAACAATA
CACTGATAAGAGTGATAGAATTTGGAGAGAAATTGGTAGAGGTGGTTTACCATTTTGTAC
GGAACCTGAATGCAGACATGTCATCAGACCAAATGTTGTGTTCTTTGGTGAACCACTCTC
TCAAGACTTTAGAGTAAATACAATCACAGATTTTAGAAAAGCTGATCTATTAATTGTAAT
GGGTACAAGTTTAATAGTTTATCCATTCGCTTCACTTGTTAATGATGTTGCTTCTGATGT
TCCAAGATTACTATTCAATTTCGAATCAACTGGTCCATTTGTAAATACAATGGATTTAGA
AAGAAAGGAAAAATTAAAACAACAACAAGAAAATGAAAGTGGTGAATCATCAAATGATAA
TGATAATAATGAATTAATAGTTGAAGCAAGAGGTAATAGAGATATAGTAATTTTAGGTGA
TTGTGATAAAGGTGTTGATTATTTCAATACTCTATTTAATTCATTTTAAATAATAATTAA
ATAAAAAAAAAAAAAGTAAAAAAAAAAAATAAAAGAATAAAAAAAAAA
sequence update 1998. 7.17
Translated Amino Acid sequence 
*liy*rtffinhiai*hflffiwvgq*ktlinlikl*KKKNQNHPKYPKEWSDLFIHSYN
NEHEKVLEIIQKEPNSINSVDSLNWTPLHVAVSNKSIASCYF---

---SFDQWYCTVCQKQYTDKSDRIWREIGRGGLPFCTEPECRHVIRPNVVFFGEPLSQDF
RVNTITDFRKADLLIVMGTSLIVYPFASLVNDVASDVPRLLFNFESTGPFVNTMDLERKE
KLKQQQENESGESSNDNDNNELIVEARGNRDIVILGDCDKGVDYFNTLFNSF*iiik*kk
kk*kkkike*kk
Translated Amino Acid sequence (All Frames) 
Frame A:
minilkdilyksysylafpffylgwaiknsyqpnktikeeeskppkiskrme*fiypfl*
**t*ksfrnnskgtk*ykfsrfikldtftcccfk*incklll---

---vhsingivqfvknntlirviefgeklvevvyhfvrnlnadmssdqmlcslvnhslkt
le*iqsqilekliy*l*wvqv**fihslhllmmlllmfqdyysisnqlvhl*iqwi*ker
kn*nnnkkmkvvnhqmimiimn**lkqeviei**f*vivikvliisilylihfk**lnkk
kkskkkk*knkkk

Frame B:
*liy*rtffinhiai*hflffiwvgq*ktlinlikl*KKKNQNHPKYPKEWSDLFIHSYN
NEHEKVLEIIQKEPNSINSVDSLNWTPLHVAVSNKSIASCYF---

---firsmvlyslsktih**e**nlernw*rwftilygt*mqtchqtkccvlw*ttlsrl
*skynhrf*ks*sincngykfnslsirftc**ccf*cskitiqfrinwsickyngfrkkg
kiktttrk*kw*iik******ins*skr**rysnfr*l**rc*lfqysi*filnnn*ikk
kkvkkknkrikkk

Frame C:
d*yikghsl*ii*lfsisfflfglgnkkllst**nykrrrikttqniqkngviylsilii
mnmkkf*k*fkrnqiv*iq*ih*ighlymllfqinqlqvvt---

---SFDQWYCTVCQKQYTDKSDRIWREIGRGGLPFCTEPECRHVIRPNVVFFGEPLSQDF
RVNTITDFRKADLLIVMGTSLIVYPFASLVNDVASDVPRLLFNFESTGPFVNTMDLERKE
KLKQQQENESGESSNDNDNNELIVEARGNRDIVILGDCDKGVDYFNTLFNSF*iiik*kk
kk*kkkike*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA109 (SSA109Q) /CSM/SS/SSA1-A/SSA109Q.Seq.d/                       1562   0.0
SLA102 (SLA102Q) /CSM/SL/SLA1-A/SLA102Q.Seq.d/                       1009   0.0
SSF710 (SSF710Q) /CSM/SS/SSF7-A/SSF710Q.Seq.d/                       1007   0.0
SSK271 (SSK271Q) /CSM/SS/SSK2-C/SSK271Q.Seq.d/                        525   e-148
VSJ775 (VSJ775Q) /CSM/VS/VSJ7-D/VSJ775Q.Seq.d/                        470   e-131
SSL376 (SSL376Q) /CSM/SS/SSL3-D/SSL376Q.Seq.d/                        426   e-118
VSH233 (VSH233Q) /CSM/VS/VSH2-B/VSH233Q.Seq.d/                         52   1e-05
SSM486 (SSM486Q) /CSM/SS/SSM4-D/SSM486Q.Seq.d/                         48   2e-04
SHK377 (SHK377Q) /CSM/SH/SHK3-D/SHK377Q.Seq.d/                         48   2e-04
AHC792 (AHC792Q) /CSM/AH/AHC7-D/AHC792Q.Seq.d/                         48   2e-04
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.    38  3e-05  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  2e-04  10
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    46  8e-04  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40  0.006  11
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    40  0.012  10
BY414894|BY414894.1 Mus musculus 17 days embryo stomach cDNA, RIKEN full-length enriched library, clone:I920006K09, 3' end partial sequence.    44  0.014  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36  0.015  12
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    34  0.018  9
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    46  0.023  9
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    36  0.024  9
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX663604_4(BX663604|pid:none) Zebrafish DNA sequence from clone ...    93   1e-17
BX248320_1(BX248320|pid:none) Zebrafish DNA sequence from clone ...    87   6e-16
(Q9NTG7) RecName: Full=NAD-dependent deacetylase sirtuin-3, mito...    86   1e-15
AK316175_1(AK316175|pid:none) Homo sapiens cDNA, FLJ79074 comple...    86   1e-15
AK298572_1(AK298572|pid:none) Homo sapiens cDNA FLJ53079 complet...    86   1e-15
AK301558_1(AK301558|pid:none) Homo sapiens cDNA FLJ55144 complet...    86   1e-15
(Q8R104) RecName: Full=NAD-dependent deacetylase sirtuin-3;     ...    86   2e-15
FJ621493_1(FJ621493|pid:none) Mus musculus mitochondrial protein...    86   2e-15
AF299338_1(AF299338|pid:none) Mus musculus SIR2L3 isoform A (Sir...    83   1e-14
AM270040_47(AM270040|pid:none) Aspergillus niger contig An02c046...    82   2e-14
protein update 2009. 6. 7
PSORT 

 psg: 0.53  gvh: 0.36  alm: 0.29  top: 0.40  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSA109 is cyt
5' end seq. ID SSA109F
5' end seq. 
>SSA109F.Seq
ATGATTAATATATTAAAGGACATTCTTTATAAATCATATAGCTATTTAGCATTTCCTTTT
TTTTATTTGGGTTGGGCAATAAAAAACTCTTATCAACCTAATAAAACTATAAAAGAAGAA
GAATCAAAACCACCCAAAATATCCAAAAGAATGGAGTGATTTATTTATCCATTCTTATAA
TAATGAACATGAAAAAGTTTTAGAAATAATTCAAAAGGAACCAAATAGTATAAATTCAGT
AGATTCATTAAATTGGACACCTTTACATGTTGCTGTTTCAAATAAATCAATTGCAAGTTG
TTACTTT----------
Length of 5' end seq. 307
3' end seq. ID SSA109Z
3' end seq. 
>SSA109Z.Seq
----------GTTCATTCGATCAATGGTATTGTACAGTTTGTCAAAAACAATACACTGAT
AAGAGTGATAGAATTTGGAGAGAAATTGGTAGAGGTGGTTTACCATTTTGTACGGAACCT
GAATGCAGACATGTCATCAGACCAAATGTTGTGTTCTTTGGTGAACCACTCTCTCAAGAC
TTTAGAGTAAATACAATCACAGATTTTAGAAAAGCTGATCTATTAATTGTAATGGGTACA
AGTTTAATAGTTTATCCATTCGCTTCACTTGTTAATGATGTTGCTTCTGATGTTCCAAGA
TTACTATTCAATTTCGAATCAACTGGTCCATTTGTAAATACAATGGATTTAGAAAGAAAG
GAAAAATTAAAACAACAACAAGAAAATGAAAGTGGTGAATCATCAAATGATAATGATAAT
AATGAATTAATAGTTGAAGCAAGAGGTAATAGAGATATAGTAATTTTAGGTGATTGTGAT
AAAGGTGTTGATTATTTCAATACTCTATTTAATTCATTTTAAATAATAATTAAATAAAAA
AAAAAAAAGTAAAAAAAAAAAATAAAAGAATAAAAAAAAAA
Length of 3' end seq. 571
Connected seq. ID SSA109P
Connected seq. 
>SSA109P.Seq
ATGATTAATATATTAAAGGACATTCTTTATAAATCATATAGCTATTTAGCATTTCCTTTT
TTTTATTTGGGTTGGGCAATAAAAAACTCTTATCAACCTAATAAAACTATAAAAGAAGAA
GAATCAAAACCACCCAAAATATCCAAAAGAATGGAGTGATTTATTTATCCATTCTTATAA
TAATGAACATGAAAAAGTTTTAGAAATAATTCAAAAGGAACCAAATAGTATAAATTCAGT
AGATTCATTAAATTGGACACCTTTACATGTTGCTGTTTCAAATAAATCAATTGCAAGTTG
TTACTTT----------GTTCATTCGATCAATGGTATTGTACAGTTTGTCAAAAACAATA
CACTGATAAGAGTGATAGAATTTGGAGAGAAATTGGTAGAGGTGGTTTACCATTTTGTAC
GGAACCTGAATGCAGACATGTCATCAGACCAAATGTTGTGTTCTTTGGTGAACCACTCTC
TCAAGACTTTAGAGTAAATACAATCACAGATTTTAGAAAAGCTGATCTATTAATTGTAAT
GGGTACAAGTTTAATAGTTTATCCATTCGCTTCACTTGTTAATGATGTTGCTTCTGATGT
TCCAAGATTACTATTCAATTTCGAATCAACTGGTCCATTTGTAAATACAATGGATTTAGA
AAGAAAGGAAAAATTAAAACAACAACAAGAAAATGAAAGTGGTGAATCATCAAATGATAA
TGATAATAATGAATTAATAGTTGAAGCAAGAGGTAATAGAGATATAGTAATTTTAGGTGA
TTGTGATAAAGGTGTTGATTATTTCAATACTCTATTTAATTCATTTTAAATAATAATTAA
ATAAAAAAAAAAAAAGTAAAAAAAAAAAATAAAAGAATAAAAAAAAAA
Length of connected seq. 878
Full length Seq ID -
Full length Seq. -
Length of full length seq. -