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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSA107
Library SS
(Link to library)
Clone ID SSA107
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01493-1|Contig-U12161-1
Original site URL
Representative seq. ID SSA107P
(Link to Original site)
Representative DNA sequence 
>SSA107 (SSA107Q) /CSM/SS/SSA1-A/SSA107Q.Seq.d/
CAAAAAAAAAAAAAAAAAAAATTAAATACTAACAACAAAAACAATTAATTAAAAGACAAA
ATTTAGCTAAATATAGAGTACTTGTATTAACATTTATCTCTTGGAAAAAAAAAAAAAAAA
TCTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACTCGTTATTATTTTA
AGGGGAAGGGAAAAAAAAATTTTTTTTAAAAATTTTTTAGTAAAAGATTAAAAAAAAAAA
ACAAACAAACAAACAAACAAACTAAACAAAAATGGATGGGTATAACCAACAGCAACAGCA
ACAACAACAACAACAACAACAACACCAAATGAATCTAGGTTCATCGGGTGGTATTTTACA
TAGCCCCCAACAACACCAACAACAACAACAACAACAACAACAACAACAACAGCAACCAAT
GXXXXXXXXXXTTCAGTTCAAGGTACAATCTATGCATCTGAAGGTGTTTATCATCCATCA
GATTTAAGAATAAAATATGATTTGAAATCGATCGACTCAAAATCAAATCTTGACAATGTA
AATAGAATGAAACTTTACGACTATAAATATAATCCACAATGGACTCATATGAATGGTAGG
GATCCATATTTAGATAATTGTGATAGAGGTGTTATCGCCCAAGATCTTCAAAGAATTTTA
CCAAATGCAGTACGTACCATTGGTAATAAGAATGTAAATGGCCAAGAAATTGAAAATCTT
TTAGTAATTAAAAATGAAGCTTTAGTAATGGAAACAATTGGTGCAACTCAAGAACTTTCA
AAACAAATGGATGAAATGAAATTAAAATTAATTACCTATGAATCAAAATTAAAAAATTTA
AAAAAGAAATCAAAAAATCAAACTATTCTATTGATTATATTCATGATAACCTTTTTATTG
GTTGCTCTCTATATGTATAAACCATCAACCCATCATAGTCATCATCGTCGTCATAATTTT
GATAATAATGATAATTAAAAAATAAAATAGTATAATAAAATAAAATAAAATAAATAAGTA
ATATTAAAATAATAAAAA
sequence update 1998. 7.17
Translated Amino Acid sequence 
kkkkkkn*ilttktin*ktkfs*i*stciniyllekkkknlkkkkkkkkkkkrknsllf*
gegkkkfflkif**kikkkkqtnkqtn*TKMDGYNQQQQQQQQQQQQHQMNLGSSGGILH
SPQQHQQQQQQQQQQQQQPM---

---SVQGTIYASEGVYHPSDLRIKYDLKSIDSKSNLDNVNRMKLYDYKYNPQWTHMNGRD
PYLDNCDRGVIAQDLQRILPNAVRTIGNKNVNGQEIENLLVIKNEALVMETIGATQELSK
QMDEMKLKLITYESKLKNLKKKSKNQTILLIIFMITFLLVALYMYKPSTHHSHHRRHNFD
NNDN*kik*ynkik*nk*vilk**k
Translated Amino Acid sequence (All Frames) 
Frame A:
qkkkkkklntnnknn*lkdki*lnieyly*hlslgkkkkksqekkkkkkkkkkkklviil
rgrekkiffknflvkd*kkktnkqtnklnkngwv*ptatattttttttpnesrfigwyft
*ppttptttttttttttatn---

---fssrynlci*rclssirfknki*feidrlkiks*qck*netlrl*i*stmdsyew*g
sifr*l**rcyrprssknftkcstyhw**eckwprn*ksfsn*k*sfsngnnwcnsrtfk
tng*neikinyl*ikikkfkkeikksnysidyihdnlfigcslyv*tinps*sssss*f*
****lknkiv**nkik*isnikiik

Frame B:
kkkkkkn*ilttktin*ktkfs*i*stciniyllekkkknlkkkkkkkkkkkrknsllf*
gegkkkfflkif**kikkkkqtnkqtn*TKMDGYNQQQQQQQQQQQQHQMNLGSSGGILH
SPQQHQQQQQQQQQQQQQPM---

---SVQGTIYASEGVYHPSDLRIKYDLKSIDSKSNLDNVNRMKLYDYKYNPQWTHMNGRD
PYLDNCDRGVIAQDLQRILPNAVRTIGNKNVNGQEIENLLVIKNEALVMETIGATQELSK
QMDEMKLKLITYESKLKNLKKKSKNQTILLIIFMITFLLVALYMYKPSTHHSHHRRHNFD
NNDN*kik*ynkik*nk*vilk**k

Frame C:
kkkkkkiky*qqkqlikrqnlakyrvlvltfiswkkkkkisrkkkkkkkkkkektryyfk
gkgkknff*kffskrlkkknkqtnkqtkqkwmgitnsnsnnnnnnnntk*i*vhrvvfyi
apnntnnnnnnnnnnnsnq---

---qfkvqsmhlkvfiihqi*e*nmi*nrstqnqiltm*ie*nfttiniihngli*mvgi
hi*iivievlspkifkefyqmqyvplvirm*makklkif**lkmkl**wkqlvqlknfqn
kwmk*n*n*lpmnqn*ki*krnqkiklfy*lys**pfywllsicinhqpiiviivviili
imiikk*nsiik*nkink*y*nnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSA107 (SSA107Q) /CSM/SS/SSA1-A/SSA107Q.Seq.d/                        728   0.0
CHM338 (CHM338Q) /CSM/CH/CHM3-B/CHM338Q.Seq.d/                        728   0.0
SLF127 (SLF127Q) /CSM/SL/SLF1-B/SLF127Q.Seq.d/                        714   0.0
SLE771 (SLE771Q) /CSM/SL/SLE7-C/SLE771Q.Seq.d/                        662   0.0
SLD434 (SLD434Q) /CSM/SL/SLD4-B/SLD434Q.Seq.d/                        444   e-123
AFH608 (AFH608Q) /CSM/AF/AFH6-A/AFH608Q.Seq.d/                         40   0.066
VSK291 (VSK291Q) /CSM/VS/VSK2-D/VSK291Q.Seq.d/                         38   0.26
SSJ511 (SSJ511Q) /CSM/SS/SSJ5-A/SSJ511Q.Seq.d/                         38   0.26
SSC814 (SSC814Q) /CSM/SS/SSC8-A/SSC814Q.Seq.d/                         38   0.26
SHG603 (SHG603Q) /CSM/SH/SHG6-A/SHG603Q.Seq.d/                         38   0.26
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU075919) Dictyostelium discoideum slug cDNA, clone SSA107.      690   0.0    2
(BJ382954) Dictyostelium discoideum cDNA clone:ddc46l09, 3' ...   678   0.0    2
(AU052803) Dictyostelium discoideum slug cDNA, clone SLF127.      676   0.0    2
(AU039571) Dictyostelium discoideum slug cDNA, clone SLE771.      632   0.0    2
(U66369) Dictyostelium discoideum ORFveg132 mRNA, partial cds.    674   0.0    1
(BJ368365) Dictyostelium discoideum cDNA clone:ddc46l09, 5' ...   579   e-161  1
(AU052507) Dictyostelium discoideum slug cDNA, clone SLD434.      406   e-154  2
(C24612) Dictyostelium discoideum slug cDNA, clone SL-X007.        86   6e-24  2
(AC117157) Rattus norvegicus clone CH230-162B12, *** SEQUENC...    50   0.18   1
(CU896637) Zebrafish DNA sequence from clone DKEY-43K18 in l...    36   0.41   2
dna update 2009. 7.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q66IV1) RecName: Full=Uncharacterized protein C11orf9 homolog; ...    88   5e-16
AB023171_1(AB023171|pid:none) Homo sapiens mRNA for KIAA0954 pro...    87   9e-16
(Q9Y2G1) RecName: Full=Uncharacterized protein C11orf9;  &AB3854...    87   9e-16
AF086762_1(AF086762|pid:none) Homo sapiens C11orf9 mRNA, complet...    87   9e-16
AK141695_1(AK141695|pid:none) Mus musculus 9 days embryo whole b...    87   1e-15
AK039649_1(AK039649|pid:none) Mus musculus adult male spinal cor...    87   1e-15
BC157942_1(BC157942|pid:none) Mus musculus gene model 98, (NCBI)...    87   1e-15
AK144411_1(AK144411|pid:none) Mus musculus adult male intestinal...    77   1e-12
BC148934_1(BC148934|pid:none) Bos taurus hypothetical protein LO...    75   4e-12
AE013599_4061(AE013599|pid:none) Drosophila melanogaster chromos...    72   4e-11
protein update 2009. 6. 7
PSORT 

 psg: 0.81  gvh: 0.34  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSA107 is cyt
5' end seq. ID SSA107F
5' end seq. 
>SSA107F.Seq
CAAAAAAAAAAAAAAAAAAAATTAAATACTAACAACAAAAACAATTAATTAAAAGACAAA
ATTTAGCTAAATATAGAGTACTTGTATTAACATTTATCTCTTGGAAAAAAAAAAAAAAAA
TCTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACTCGTTATTATTTTA
AGGGGAAGGGAAAAAAAAATTTTTTTTAAAAATTTTTTAGTAAAAGATTAAAAAAAAAAA
ACAAACAAACAAACAAACAAACTAAACAAAAATGGATGGGTATAACCAACAGCAACAGCA
ACAACAACAACAACAACAACAACACCAAATGAATCTAGGTTCATCGGGTGGTATTTTACA
TAGCCCCCAACAACACCAACAACAACAACAACAACAACAACAACAACAACAGCAACCAAT
G----------
Length of 5' end seq. 421
3' end seq. ID SSA107Z
3' end seq. 
>SSA107Z.Seq
----------TTCAGTTCAAGGTACAATCTATGCATCTGAAGGTGTTTATCATCCATCAG
ATTTAAGAATAAAATATGATTTGAAATCGATCGACTCAAAATCAAATCTTGACAATGTAA
ATAGAATGAAACTTTACGACTATAAATATAATCCACAATGGACTCATATGAATGGTAGGG
ATCCATATTTAGATAATTGTGATAGAGGTGTTATCGCCCAAGATCTTCAAAGAATTTTAC
CAAATGCAGTACGTACCATTGGTAATAAGAATGTAAATGGCCAAGAAATTGAAAATCTTT
TAGTAATTAAAAATGAAGCTTTAGTAATGGAAACAATTGGTGCAACTCAAGAACTTTCAA
AACAAATGGATGAAATGAAATTAAAATTAATTACCTATGAATCAAAATTAAAAAATTTAA
AAAAGAAATCAAAAAATCAAACTATTCTATTGATTATATTCATGATAACCTTTTTATTGG
TTGCTCTCTATATGTATAAACCATCAACCCATCATAGTCATCATCGTCGTCATAATTTTG
ATAATAATGATAATTAAAAAATAAAATAGTATAATAAAATAAAATAAAATAAATAAGTAA
TATTAAAATAATAAAAA
Length of 3' end seq. 607
Connected seq. ID SSA107P
Connected seq. 
>SSA107P.Seq
CAAAAAAAAAAAAAAAAAAAATTAAATACTAACAACAAAAACAATTAATTAAAAGACAAA
ATTTAGCTAAATATAGAGTACTTGTATTAACATTTATCTCTTGGAAAAAAAAAAAAAAAA
TCTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACTCGTTATTATTTTA
AGGGGAAGGGAAAAAAAAATTTTTTTTAAAAATTTTTTAGTAAAAGATTAAAAAAAAAAA
ACAAACAAACAAACAAACAAACTAAACAAAAATGGATGGGTATAACCAACAGCAACAGCA
ACAACAACAACAACAACAACAACACCAAATGAATCTAGGTTCATCGGGTGGTATTTTACA
TAGCCCCCAACAACACCAACAACAACAACAACAACAACAACAACAACAACAGCAACCAAT
G----------TTCAGTTCAAGGTACAATCTATGCATCTGAAGGTGTTTATCATCCATCA
GATTTAAGAATAAAATATGATTTGAAATCGATCGACTCAAAATCAAATCTTGACAATGTA
AATAGAATGAAACTTTACGACTATAAATATAATCCACAATGGACTCATATGAATGGTAGG
GATCCATATTTAGATAATTGTGATAGAGGTGTTATCGCCCAAGATCTTCAAAGAATTTTA
CCAAATGCAGTACGTACCATTGGTAATAAGAATGTAAATGGCCAAGAAATTGAAAATCTT
TTAGTAATTAAAAATGAAGCTTTAGTAATGGAAACAATTGGTGCAACTCAAGAACTTTCA
AAACAAATGGATGAAATGAAATTAAAATTAATTACCTATGAATCAAAATTAAAAAATTTA
AAAAAGAAATCAAAAAATCAAACTATTCTATTGATTATATTCATGATAACCTTTTTATTG
GTTGCTCTCTATATGTATAAACCATCAACCCATCATAGTCATCATCGTCGTCATAATTTT
GATAATAATGATAATTAAAAAATAAAATAGTATAATAAAATAAAATAAAATAAATAAGTA
ATATTAAAATAATAAAAA
Length of connected seq. 1028
Full length Seq ID -
Full length Seq. -
Length of full length seq. -