SLK886
Library SL
(Link to library)
Clone ID SLK886
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16177-1
Original site URL
Representative seq. ID SLK886E
(Link to Original site)
Representative DNA sequence
>SLK886 (SLK886Q) /CSM/SL/SLK8-D/SLK886Q.Seq.d/
CGACAAATACCCACGTTCAATCGTTAGATCAATGAGCAGAAAGACCATCCTCAAACGTAC
TGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCATGCCAACCCGTTACAA
CTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACACCGTCACTGTTGAAAG
CTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAAAGATCTTTGAAGCCAA
ACACAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAATTAAGATTCTAAATTATCTTTTT
ATAATAAATTTGTTTCTTTAAAAAATAT
sequence update 1999. 7.23
Translated Amino Acid sequence
DKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVES
SQVAKRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF*iifl**icffkky


Translated Amino Acid sequence (All Frames)
Frame A:
rqiptfnr*ineqkdhpqtychpfic*srqlqphhanplql*rs**iclhwsqkhrhc*k
ltsrqtcshsfsrqkdl*sqtqsw*ikmvll*ikilnylfiinlfl*ki


Frame B:
DKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVES
SQVAKRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF*iifl**icffkky


Frame C:
tnthvqsldq*aerpssnvlpsvhllkssitttscqpvttlkvvmnlpslvsktpsllka
hkspnvltlv*pskrslkpntklvnqngssln*dsklsfynkfvslkn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL369 (VFL369Q) /CSM/VF/VFL3-C/VFL369Q.Seq.d/ 650 0.0
SSI266 (SSI266Q) /CSM/SS/SSI2-C/SSI266Q.Seq.d/ 650 0.0
SLK886 (SLK886Q) /CSM/SL/SLK8-D/SLK886Q.Seq.d/ 650 0.0
VHM550 (VHM550Q) /CSM/VH/VHM5-C/VHM550Q.Seq.d/ 648 0.0
SSJ556 (SSJ556Q) /CSM/SS/SSJ5-C/SSJ556Q.Seq.d/ 640 0.0
VSB706 (VSB706Q) /CSM/VS/VSB7-A/VSB706Q.Seq.d/ 634 0.0
FC-BM23 (FC-BM23Q) /CSM/FC/FC-BM/FC-BM23Q.Seq.d/ 634 0.0
FC-AB06 (FC-AB06Q) /CSM/FC/FC-AB/FC-AB06Q.Seq.d/ 618 e-176
FC-027 (FC-027Q) /CSM/CG/CG-FC/FC-027Q.Seq.d/ 618 e-176
VFJ378 (VFJ378Q) /CSM/VF/VFJ3-D/VFJ378Q.Seq.d/ 369 e-101

own update 2002.12.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB080831|CB080831.1 qp48g09.b1 Hedyotis terminalis flower - Stage 2 (NYBG) Hedyotis terminalis cDNA clone qp48g09, mRNA sequence. 56 3e-04 1
BQ588323|BQ588323.1 E012308-024-008-F12-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-008-F12 5-PRIME, mRNA sequence. 54 0.001 1
CD263615|CD263615.1 psMC004xL09f_193906 sMC: Phytophtora sojae grown in synthetic medium Phytophthora sojae cDNA clone sMC004L09 5, mRNA sequence. 52 0.004 1
BI210734|BI210734.1 EST528774 cTOS Lycopersicon esculentum cDNA clone cTOS24O3 5' end, mRNA sequence. 52 0.004 1
BG128686|BG128686.1 EST474332 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF21D6 5' sequence, mRNA sequence. 52 0.004 1
AW623716|AW623716.1 EST321661 tomato flower buds 3-8 mm, Cornell University Lycopersicon esculentum cDNA clone cTOB11J18 5', mRNA sequence. 52 0.004 1
AW621215|AW621215.1 EST312013 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX11M3 5', mRNA sequence. 52 0.004 1
BE776340|BE776340.1 MY-14-E-12 PinfestansMY Phytophthora infestans cDNA, mRNA sequence. 52 0.004 1
CD045717|CD045717.1 psHB021xC14f_280835 psHB: Infected hypocotyl soybean host. 48 hrs post infection Phytophthora sojae cDNA clone sHB021C14 5, mRNA sequence. 52 0.004 1
CD265887|CD265887.1 psMC012xN09f_288189 sMC: Phytophtora sojae grown in synthetic medium Phytophthora sojae cDNA clone sMC012N09 5, mRNA sequence. 52 0.004 1
dna update 2003. 7.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55BE6) RecName: Full=60S ribosomal protein L27; 190 1e-47
AY682471_1(AY682471|pid:none) Chara globularis 60S ribosomal pro... 92 4e-18
(P0C2H7) RecName: Full=60S ribosomal protein L27-B; &S69638(S69... 92 7e-18
(P0C2H6) RecName: Full=60S ribosomal protein L27-A; &S46790(S46... 91 9e-18
AM850117_14(AM850117|pid:none) Nakaseomyces delphensis STP1 regi... 89 6e-17
AP007154_367(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 89 6e-17
AY857441_1(AY857441|pid:none) Suberites domuncula L27 mRNA, comp... 87 1e-16
CR382128_225(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 87 2e-16
EU979496_1(EU979496|pid:none) Ornithoctonus huwena clone HWEc247... 87 2e-16
CR380957_279(CR380957|pid:none) Candida glabrata strain CBS138 c... 86 3e-16
protein update 2009. 7. 5
PSORT

psg: 0.66 gvh: 0.28 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.58 mip: 0.07
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: mitochondrial
20.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SLK886 is mit

5' end seq. ID SLK886F
5' end seq.
>SLK886F.Seq
CGACAAATACCCACGTTCAATCGTTAGATCAATGAGCAGAAAGACCATCCTCAAACGTAC
TGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCATGCCAACCCGTTACAA
CTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACACCGTCACTGTTGAAAG
CTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAAAGATCTTTGAAGCCAA
ACACAAAGCTGGTAAATCA----------
Length of 5' end seq. 259
3' end seq. ID SLK886Z
3' end seq.
>SLK886Z.Seq
----------CGTTCAATCGTTAGATCAATGAGCAGAAAGACCATCCTCAAACGTACTGC
CATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCATGCCAACCCGTTACAACTT
TGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACACCGTCACTGTTGAAAGCTC
ACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAAAGATCTTTGAAGCCAAACA
CAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAATTAAGATTCTAAATTATCTTTTTATA
ATAAATTTGTTTCTTTAAAAAATAT
Length of 3' end seq. 315
Connected seq. ID SLK886P
Connected seq.
>SLK886P.Seq
CGACAAATACCCACGTTCAATCGTTAGATCAATGAGCAGAAAGACCATCCTCAAACGTAC
TGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCATGCCAACCCGTTACAA
CTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACACCGTCACTGTTGAAAG
CTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAAAGATCTTTGAAGCCAA
ACACAAAGCTGGTAAATCA----------CGTTCAATCGTTAGATCAATGAGCAGAAAGA
CCATCCTCAAACGTACTGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCA
TGCCAACCCGTTACAACTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACA
CCGTCACTGTTGAAAGCTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAA
AGATCTTTGAAGCCAAACACAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAATTAAGAT
TCTAAATTATCTTTTTATAATAAATTTGTTTCTTTAAAAAATAT
Length of connected seq. 574
Full length Seq ID SLK886E
Full length Seq.
>SLK886E.Seq
CGACAAATACCCACGTTCAATCGTTAGATCAATGAGCAGAAAGACCATCCTCAAACGTAC
TGCCATCCGTTCATTTGTTAAAGTCGTCAATTACAACCACATCATGCCAACCCGTTACAA
CTTTGAAGGTCGTGATGAATCTGCCTTCACTGGTCTCAAAAACACCGTCACTGTTGAAAG
CTCACAAGTCGCCAAACGTGCTCACACTCGTTTAGCCGTCAAAAAGATCTTTGAAGCCAA
ACACAAAGCTGGTAAATCAAAATGGTTCTTCTCTAAATTAAGATTCTAAATTATCTTTTT
ATAATAAATTTGTTTCTTTAAAAAATAT
Length of full length seq. 328