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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK832
Library SL
(Link to library)
Clone ID SLK832
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11519-1|Contig-U15821-1
Original site URL
Representative seq. ID SLK832P
(Link to Original site)
Representative DNA sequence 
>SLK832 (SLK832Q) /CSM/SL/SLK8-B/SLK832Q.Seq.d/
AGTTTTTTTAGTAAATAAATTTTATTTGAAAAACGATAAATTTCTAAAAAGGTTTAAAAA
TTACCATCGGGAGATATTTCTAAATCAAATGATTCACCAATTGAATTATGGGATAATTTA
ATGAATGGATTTGATGGTATTATTGAAAGTAGAGAAAGATGGAGTGATAATTTCAATGAA
TTGGGTGAAATTXXXXXXXXXXTGAAAATCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACGAGGACAGCAGCAATATGATAATAGTC
AACCAAAAAAGTATTTAATACCTTTTTCAGCAAATTCAACTTTATCATTAAAGAAATATC
AATCAATTATTGAAAGTGAAGAATTTCAATTAAAAATAAATTTTAATGAATTTGTTAAAA
ATCAAATTTTTAATAAAAAAAAAAAAAAA
sequence update 1999. 3. 8
Translated Amino Acid sequence 
sffsk*ilfekr*iskkv*KLPSGDISKSNDSPIELWDNLMNGFDGIIESRERWSDNFNE
LGEI---

---ENQQQQQQQQQQQQQQQQQQQQQRGQQQYDNSQPKKYLIPFSANSTLSLKKYQSIIE
SEEFQLKINFNEFVKNQIFNKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
sffsk*ilfekr*iskkv*KLPSGDISKSNDSPIELWDNLMNGFDGIIESRERWSDNFNE
LGEI---

---*kstttttttttttttttttttttrtaai***stkkvfntffskfnfiikeisiny*
k*risiknkf**ic*ksnf**kkkk

Frame B:
vflvnkfylkndkflkrfknyhreiflnqmihqlnygii**mdlmvllkvekdgviismn
wvk---

---ENQQQQQQQQQQQQQQQQQQQQQRGQQQYDNSQPKKYLIPFSANSTLSLKKYQSIIE
SEEFQLKINFNEFVKNQIFNKKKKK

Frame C:
ff**infi*ktinf*kglkitigryf*ik*ftn*img*fnewi*wyy*k*rkme**fq*i
g*n---

---kinnnnnnnnnnnnnnnnnnnnnedssnmiivnqksi*ylfqqiqlyh*rninqllk
vknfn*k*ilmnllkikflikkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK832 (SLK832Q) /CSM/SL/SLK8-B/SLK832Q.Seq.d/                        363   2e-99
VHG632 (VHG632Q) /CSM/VH/VHG6-B/VHG632Q.Seq.d/                        121   1e-26
CHL518 (CHL518Q) /CSM/CH/CHL5-A/CHL518Q.Seq.d/                         64   2e-09
VSF545 (VSF545Q) /CSM/VS/VSF5-B/VSF545Q.Seq.d/                         50   3e-05
VFJ857 (VFJ857Q) /CSM/VF/VFJ8-C/VFJ857Q.Seq.d/                         42   0.007
VSG864 (VSG864Q) /CSM/VS/VSG8-C/VSG864Q.Seq.d/                         40   0.028
SSM246 (SSM246Q) /CSM/SS/SSM2-B/SSM246Q.Seq.d/                         40   0.028
CHM734 (CHM734Q) /CSM/CH/CHM7-B/CHM734Q.Seq.d/                         40   0.028
CHF737 (CHF737Q) /CSM/CH/CHF7-B/CHF737Q.Seq.d/                         40   0.028
SSF879 (SSF879Q) /CSM/SS/SSF8-D/SSF879Q.Seq.d/                         38   0.11
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   319  e-173  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44  6e-08  14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    52  2e-05  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  6e-04  9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44  0.007  12
AC116925|AC116925.2 Dictyostelium discoideum chromosome 2 map 4189423-4228998 strain AX4, complete sequence.    34  0.011  8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    32  0.020  13
AE002138|AE002138.1 Ureaplasma urealyticum section 39 of 59 of the complete genome.    30  0.025  7
AC084088|AC084088.4 Homo sapiens chromosome 8 clone CTD-2365B17 map 8, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.033  3
AF193903|AF193903.1 Cafeteria roenbergensis mitochondrial DNA, complete genome.    36  0.068  5
dna update 2003. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...   100   1e-20
AC116982_22(AC116982|pid:none) Dictyostelium discoideum chromoso...    59   7e-08
AC116982_19(AC116982|pid:none) Dictyostelium discoideum chromoso...    56   3e-07
AC116963_15(AC116963|pid:none) Dictyostelium discoideum chromoso...    55   1e-06
AC116982_72(AC116982|pid:none) Dictyostelium discoideum chromoso...    51   1e-05
AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso...    50   2e-05
AC116982_27(AC116982|pid:none) Dictyostelium discoideum chromoso...    45   6e-04
AC116982_28(AC116982|pid:none) Dictyostelium discoideum chromoso...    42   0.005
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso...    39   0.056
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso...    39   0.056
protein update 2009. 1.26
PSORT 

 psg: 0.60  gvh: 0.26  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: peroxisomal

>> prediction for SLK832 is nuc
5' end seq. ID SLK832F
5' end seq. 
>SLK832F.Seq
AGTTTTTTTAGTAAATAAATTTTATTTGAAAAACGATAAATTTCTAAAAAGGTTTAAAAA
TTACCATCGGGAGATATTTCTAAATCAAATGATTCACCAATTGAATTATGGGATAATTTA
ATGAATGGATTTGATGGTATTATTGAAAGTAGAGAAAGATGGAGTGATAATTTCAATGAA
TTGGGTGAAATT----------
Length of 5' end seq. 192
3' end seq. ID SLK832Z
3' end seq. 
>SLK832Z.Seq
----------TGAAAATCAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACGAGGACAGCAGCAATATGATAATAGTCAACCAAAAAAGT
ATTTAATACCTTTTTCAGCAAATTCAACTTTATCATTAAAGAAATATCAATCAATTATTG
AAAGTGAAGAATTTCAATTAAAAATAAATTTTAATGAATTTGTTAAAAATCAAATTTTTA
ATAAAAAAAAAAAAAAA
Length of 3' end seq. 247
Connected seq. ID SLK832P
Connected seq. 
>SLK832P.Seq
AGTTTTTTTAGTAAATAAATTTTATTTGAAAAACGATAAATTTCTAAAAAGGTTTAAAAA
TTACCATCGGGAGATATTTCTAAATCAAATGATTCACCAATTGAATTATGGGATAATTTA
ATGAATGGATTTGATGGTATTATTGAAAGTAGAGAAAGATGGAGTGATAATTTCAATGAA
TTGGGTGAAATT----------TGAAAATCAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACGAGGACAGCAGCAATATGATAATAGTC
AACCAAAAAAGTATTTAATACCTTTTTCAGCAAATTCAACTTTATCATTAAAGAAATATC
AATCAATTATTGAAAGTGAAGAATTTCAATTAAAAATAAATTTTAATGAATTTGTTAAAA
ATCAAATTTTTAATAAAAAAAAAAAAAAA
Length of connected seq. 439
Full length Seq ID -
Full length Seq. -
Length of full length seq. -