SLK673 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SLK673
Library	SL (Link to library)
Clone ID	SLK673 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16483-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SL/SLK6-D/SLK673Q.Seq.d/
Representative seq. ID	SLK673P (Link to Original site)
Representative DNA sequence	>SLK673 (SLK673Q) /CSM/SL/SLK6-D/SLK673Q.Seq.d/ CTATATTGTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAA CAAATCAGAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCC AATGGATTGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAG AATAGATTCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCAAA ATTATGTCCAAAGGAATTAATTGCTGTTAGATGTGCCAATGGTACAATTCCAACCTATAC TATCGCTGCAACTCGTTGTTTATCATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATT GGTTGTTCCAGGTTGTTCTGGTGGATACACTTTAAAATCATATGCGTCAAAACCAAATGG TTGTCCACGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCACAATCAAA ATTCAAAAAATTAATTAAAAAAAAAAAATAAATGATTAAAAACCCAAAAAATACTGGTTT TTCAAAAAAAAAAAAXXXXXXXXXXTTACCAATTTCACCCCGGGAAACCAGCTTTGNCCN TTGATTCCCCCCAGCCTCTAAATCCGACTCCCCTTTCGGGAAAACTGGTACCNCCTGCAG GTACCGGTCCGGAATTCCCGGGCTATATTGGTGGATTCCAAAAGAACCCAATTCAAATAT TGAAATTAAGAAATTAAAATAGTNACAANTCAGAGAAACTAAACTCAATTGGAAAATAGT TACTCACAAGATGTATCGTTTGTTCCAATGGATTNGTTGGAATATAAGGTTACCACTGGT GAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCTCCATAGATTAT ATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTGCTGTTAGATGT GCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTATCATTCAGTGGT TGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTGGATACACTTTA AAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCCCATCATTTTTA TCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTAAAAAAAAAAAATAAATG ATTAAAAACCCAAAAAATACTGGTTTTTCAAAAAAAAAAAA
sequence update	1999. 2.19
Translated Amino Acid sequence	yivdsketnsnieikklnsnkseklnsiensysqdvsfvpmdwleykvttgesvftvsgr idsnktvsidymfislpdpklcpkeliavrcangtiptytiaatrclsfsgcvhrgicpl vvpgcsggytlksyaskpngcpryycipsflsfiipqskfkklikkkkMIKNPKNTGF SKKK--- ---YQFHPGKPALXXDSPQPLNPTPLSGKLVPPAGTGPEFPGYIGGFQKNPIQILKLRN* nsxxseklnsigklltrcivcsngxvgigyhwicvhswknrfknrlhrlyvyft skimskginccmcqwynsnlyyrcnslfiiqwlctrnlsigcsrlfwwihfkiicvk tkwlstlllhpiifiliyystikiqkinkkkind*kpkkywffkkkk
Translated Amino Acid sequence (All Frames)	Frame A: lycrfkrnqfkyneik*qiretklnklltrcivcsnglvgigyhwicvhswk nrfknrlhrlyvyftskimskginccmcqwynsnlyyrcnslfiiqwlctrnlsi gcsrlfwwihfkiicvktkwlstlllhpiifiliyystikiqkinkkkindkpkkywf fkkkk--- ---lpispretsfxxfppasksdspfgktgtxcryrsgipglywwipkepnsnieikkl kxqxretklnwkivthkmyrlfqwixwnirlplvnlcsqlveeiqikpspiicllvy liqnyvqrnllldvpmvqfqpilslqlvvyhsvvvyieefvhwlfqvvlvdtlnhmrq nqmvvhviiashhfylnllfhnqnsknlkkknklktqkilvfqkkk Frame B: yivdsketnsnieikklnsnkseklnsiensysqdvsfvpmdwleykvttgesvftvsgr idsnktvsidymfislpdpklcpkeliavrcangtiptytiaatrclsfsgcvhrgicpl vvpgcsggytlksyaskpngcpryycipsflsfiipqskfkklikkkkMIKNPKNTGF SKKK--- ---YQFHPGKPALXXDSPQPLNPTPLSGKLVPPAGTGPEFPGYIGGFQKNPIQILKLRN nsxxseklnsigklltrcivcsngxvgigyhwicvhswknrfknrlhrlyvyft skimskginccmcqwynsnlyyrcnslfiiqwlctrnlsigcsrlfwwihfkiicvk tkwlstlllhpiifiliyystikiqkinkkkindkpkkywffkkkk Frame C: iliqkkpiqilklrnivtnqrntqlkivthkmyrlfqwigwnirlplvnlcsqlvee iqikpspiicllvyliqnyvqrnllldvpmvqfqpilslqlvvyhsvvvyieefvhw lfqvvlvdtlnhmrqnqmvvhviiashhfylnllfhnqnsknlkkknklktqkilvf qkkk--- ---tnftpgnqlxplippslirlpfrenwyxlqvpvrnsrailvdskrtqfkyneik ivtxqrntqlensysqdvsfvpmdxleykvttgesvftvsgridsnktvsidymfislp dpklcpkeliavrcangtiptytiaatrclsfsgcvhrgicplvvpgcsggytlksyask pngcpryycipsflsfiipqskfkklikkkkmiknpkntgfskkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SLK673 (SLK673Q) /CSM/SL/SLK6-D/SLK673Q.Seq.d/ 1150 0.0 SSM142 (SSM142Q) /CSM/SS/SSM1-B/SSM142Q.Seq.d/ 959 0.0 SSL161 (SSL161Q) /CSM/SS/SSL1-C/SSL161Q.Seq.d/ 959 0.0 SSK716 (SSK716Q) /CSM/SS/SSK7-A/SSK716Q.Seq.d/ 959 0.0 SSK349 (SSK349Q) /CSM/SS/SSK3-C/SSK349Q.Seq.d/ 959 0.0 SSJ364 (SSJ364Q) /CSM/SS/SSJ3-C/SSJ364Q.Seq.d/ 959 0.0 SSI216 (SSI216Q) /CSM/SS/SSI2-A/SSI216Q.Seq.d/ 959 0.0 SSH142 (SSH142Q) /CSM/SS/SSH1-B/SSH142Q.Seq.d/ 959 0.0 SSF374 (SSF374Q) /CSM/SS/SSF3-D/SSF374Q.Seq.d/ 959 0.0 SSF277 (SSF277Q) /CSM/SS/SSF2-D/SSF277Q.Seq.d/ 959 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116921\|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence. 959 0.0 4 BG899581\|BG899581.1 HOA24-1-H11 HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA, mRNA sequence. 76 1e-09 1 BG781718\|BG781718.1 SEAUMC001675 Sea urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PC_0013_A1_E04_MR 5', mRNA sequence. 58 2e-07 3 BG897685\|BG897685.1 HOA16-1-D7 HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA, mRNA sequence. 68 3e-07 1 BM420460\|BM420460.1 U012B12 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone U012B12, mRNA sequence. 68 3e-07 1 BQ907964\|BQ907964.1 Q001G04 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone Q001G04, mRNA sequence. 68 3e-07 1 BM421447\|BM421447.1 V014E09 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone V014E09, mRNA sequence. 68 3e-07 1 BM421825\|BM421825.1 V020E07 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone V020E07, mRNA sequence. 68 3e-07 1 BM421076\|BM421076.1 U023G02 Oryza sativa mature leaf library induced by M.grisea Oryza sativa cDNA clone U023G02, mRNA sequence. 68 3e-07 1 BI799619\|BI799619.1 H136F01 Endosperm library from Oryza sativa (10 days after anthesis ) Oryza sativa cDNA clone H136F01, mRNA sequence. 68 3e-07 1
dna update	2003. 7.16
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116921_3(AC116921\|pid:none) Dictyostelium discoideum chromosom... 274 5e-72 AC116305_114(AC116305\|pid:none) Dictyostelium discoideum chromos... 82 5e-14 AC116305_115(AC116305\|pid:none) Dictyostelium discoideum chromos... 75 6e-12 AC116305_112(AC116305\|pid:none) Dictyostelium discoideum chromos... 60 2e-07 (Q4P333) RecName: Full=Chitin synthase 7; EC=2.4.1.16; ... 36 3.2 T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele... 35 4.2 U39644_2(U39644\|pid:none) Caenorhabditis elegans cosmid T10E10, ... 35 4.2 CP000084_539(CP000084\|pid:none) Candidatus Pelagibacter ubique H... 35 7.1 AE000516_3830(AE000516\|pid:none) Mycobacterium tuberculosis CDC1... 35 7.1 BX248346_201(BX248346\|pid:none) Mycobacterium bovis subsp. bovis... 35 7.1
protein update	2009. 1.25
PSORT	psg: 0.50 gvh: 0.41 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 24.0 %: mitochondrial 20.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for SLK673 is cyt
5' end seq. ID	SLK673F
5' end seq.	>SLK673F.Seq CTATATTGTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAA CAAATCAGAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCC AATGGATTGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAG AATAGATTCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCAAA ATTATGTCCAAAGGAATTAATTGCTGTTAGATGTGCCAATGGTACAATTCCAACCTATAC TATCGCTGCAACTCGTTGTTTATCATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATT GGTTGTTCCAGGTTGTTCTGGTGGATACACTTTAAAATCATATGCGTCAAAACCAAATGG TTGTCCACGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCACAATCAAA ATTCAAAAAATTAATTAAAAAAAAAAAATAAATGATTAAAAACCCAAAAAATACTGGTTT TTCAAAAAAAAAAAA
Length of 5' end seq.	555
3' end seq. ID	SLK673Z
3' end seq.	>SLK673Z.Seq ----------TTACCAATTTCACCCCGGGAAACCAGCTTTGNCCNTTGATTCCCCCCAGC CTCTAAATCCGACTCCCCTTTCGGGAAAACTGGTACCNCCTGCAGGTACCGGTCCGGAAT TCCCGGGCTATATTGGTGGATTCCAAAAGAACCCAATTCAAATATTGAAATTAAGAAATT AAAATAGTNACAANTCAGAGAAACTAAACTCAATTGGAAAATAGTTACTCACAAGATGTA TCGTTTGTTCCAATGGATTNGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACA GTTAGTGGAAGAATAGATTCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTA CCTGATCCAAAATTATGTCCAAAGGAATTAATTGCTGTTAGATGTGCCAATGGTACAATT CCAACCTATACTATCGCTGCAACTCGTTGTTTATCATTCAGTGGTTGTGTACATAGAGGA ATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTGGATACACTTTAAAATCATATGCGTCA AAACCAAATGGTTGTCCACGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATT CCACAATCAAAATTCAAAAAATTAATTAAAAAAAAAAAATAAATGATTAAAAACCCAAAA AATACTGGTTTTTCAAAAAAAAAAAA
Length of 3' end seq.	676
Connected seq. ID	SLK673P
Connected seq.	>SLK673P.Seq CTATATTGTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAA CAAATCAGAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCC AATGGATTGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAG AATAGATTCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCAAA ATTATGTCCAAAGGAATTAATTGCTGTTAGATGTGCCAATGGTACAATTCCAACCTATAC TATCGCTGCAACTCGTTGTTTATCATTCAGTGGTTGTGTACATAGAGGAATTTGTCCATT GGTTGTTCCAGGTTGTTCTGGTGGATACACTTTAAAATCATATGCGTCAAAACCAAATGG TTGTCCACGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCACAATCAAA ATTCAAAAAATTAATTAAAAAAAAAAAATAAATGATTAAAAACCCAAAAAATACTGGTTT TTCAAAAAAAAAAAA----------TTACCAATTTCACCCCGGGAAACCAGCTTTGNCCN TTGATTCCCCCCAGCCTCTAAATCCGACTCCCCTTTCGGGAAAACTGGTACCNCCTGCAG GTACCGGTCCGGAATTCCCGGGCTATATTGGTGGATTCCAAAAGAACCCAATTCAAATAT TGAAATTAAGAAATTAAAATAGTNACAANTCAGAGAAACTAAACTCAATTGGAAAATAGT TACTCACAAGATGTATCGTTTGTTCCAATGGATTNGTTGGAATATAAGGTTACCACTGGT GAATCTGTGTTCACAGTTAGTGGAAGAATAGATTCAAATAAAACCGTCTCCATAGATTAT ATGTTTATTAGTTTACCTGATCCAAAATTATGTCCAAAGGAATTAATTGCTGTTAGATGT GCCAATGGTACAATTCCAACCTATACTATCGCTGCAACTCGTTGTTTATCATTCAGTGGT TGTGTACATAGAGGAATTTGTCCATTGGTTGTTCCAGGTTGTTCTGGTGGATACACTTTA AAATCATATGCGTCAAAACCAAATGGTTGTCCACGTTATTATTGCATCCCATCATTTTTA TCTTAATTTATTATTCCACAATCAAAATTCAAAAAATTAATTAAAAAAAAAAAATAAATG ATTAAAAACCCAAAAAATACTGGTTTTTCAAAAAAAAAAAA
Length of connected seq.	1231
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas