>SLK643 (SLK643Q) /CSM/SL/SLK6-B/SLK643Q.Seq.d/
GTTTATAACGGATCTCTATGCAAATAAAAAAAAATAAAAAAAAAGGTAAAAGAAAATCAT
CAAAGAAATCAAAAAAAGAAAAAGAGGAAAATGTAGAAGAGGAAGAACAAGATCAAGAAG
AGGAAGAAGAGGGAAATAAAAAACAAAAAGAAGAAAATGATGCAGATAAAAAAAGTAGAA
AACATGATGAACATCGTAAAAAACGTGATAGTAAAAATCGTCGTTCACATAGTAAAAGTG
ATGAAAATGAAGAGGGTGAAGAAGATGATGAAGAAAGAAGAAAGAAAAGAAGACGTAGAA
AACATAGAGAAAAAAGAAAAAAGAATGGAAATAAAGAGGAGGAGGAAGAAGAAGAACAAG
ATGATGAACATGAAGATCAAAATGTTGAAGAAGATGAAGAAGATGTAAATGTAGAAAAAC
AAAAACAACAACAACAACAAAGTGATTTTGATGAAGAAGAAAAAGAAGAAGAGAAAGAAG
AGGAGGAGGAAGAGGAGCAAATAGAAATTAAAAAAAGATCAAAAAAGAGAAATAGTATAG
ATTCAGGTAGAAAAGATAAATCTAAAAXXXXXXXXXX

l*RISMQIKKNKKKGKRKSSKKSKKEKEENVEEEEQDQEEEEEGNKKQKEENDADKKSRK
HDEHRKKRDSKNRRSHSKSDENEEGEEDDEERRKKRRRRKHREKRKKNGNKEEEEEEEQD
DEHEDQNVEEDEEDVNVEKQKQQQQQSDFDEEEKEEEKEEEEEEEQIEIKKRSKKRNSID
SGRKDKSK---

Frame A:
vyngslck*kkikkkvkenhqrnqkkkkrkm*krknkikkrkkreiknkkkkmmqikkve
nmmnivknvivkivvhivkvmkmkrvkkmmkkeerkedveniekkekrmeikrrrkkknk
mmnmkikmlkkmkkm*m*knknnnnnkvilmkkkkkkrkkrrrkrsk*klkkdqkreiv*
iqvekinl---


Frame B:
fitdlyankkk*kkr*kkiikeikkrkrgkcrrgrtrsrrgrrgk*ktkrrk*cr*kk*k
t**ts*kt***kssft**k**k*rg*rr**rkkkekkt*kt*rkkkkewk*rgggrrrtr
**t*rskc*rr*rrckcrktktttttk*f**rrkrrrerrgggrganrn*kkikkek*yr
fr*kr*i*---


Frame C:
l*RISMQIKKNKKKGKRKSSKKSKKEKEENVEEEEQDQEEEEEGNKKQKEENDADKKSRK
HDEHRKKRDSKNRRSHSKSDENEEGEEDDEERRKKRRRRKHREKRKKNGNKEEEEEEEQD
DEHEDQNVEEDEEDVNVEKQKQQQQQSDFDEEEKEEEKEEEEEEEQIEIKKRSKKRNSID
SGRKDKSK---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK643 (SLK643Q) /CSM/SL/SLK6-B/SLK643Q.Seq.d/                        182   4e-45
AFF725 (AFF725Q) /CSM/AF/AFF7-B/AFF725Q.Seq.d/                        182   4e-45
SLK645 (SLK645Q) /CSM/SL/SLK6-B/SLK645Q.Seq.d/                        127   2e-28
VSK340 (VSK340Q) /CSM/VS/VSK3-B/VSK340Q.Seq.d/                         50   4e-05
VSG190 (VSG190Q) /CSM/VS/VSG1-D/VSG190Q.Seq.d/                         50   4e-05
VSF886 (VSF886Q) /CSM/VS/VSF8-D/VSF886Q.Seq.d/                         50   4e-05
VSD842 (VSD842Q) /CSM/VS/VSD8-B/VSD842Q.Seq.d/                         50   4e-05
VSD419 (VSD419Q) /CSM/VS/VSD4-A/VSD419Q.Seq.d/                         50   4e-05
VSB752 (VSB752Q) /CSM/VS/VSB7-C/VSB752Q.Seq.d/                         50   4e-05
VSA268 (VSA268Q) /CSM/VS/VSA2-C/VSA268Q.Seq.d/                         50   4e-05

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU712736|BU712736.1 SJAABED10 Adult SjC 7/94 Schistosoma japonicum cDNA, mRNA sequence.    52  2e-06  2
BU713943|BU713943.1 SJAABXA01 Adult SjC 7/94 Schistosoma japonicum cDNA, mRNA sequence.    52  2e-06  2
AV757483|AV757483.1 Homo sapiens cDNA clone:BMFAUB01, 5'end, expressed in CD34+ hematopoietic stem/progenitor cells.    38  4e-06  3
BQ299884|BQ299884.1 PM4-KT0005-201100-003-b05 KT0005 Homo sapiens cDNA, mRNA sequence.    38  2e-05  3
AZ429860|AZ429860.1 1M0214I03F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0214I03 F, DNA sequence.    48  2e-05  2
BM301381|BM301381.1 MCR045B06_25804 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR045B06 5, mRNA sequence.    44  2e-05  2
BE577688|BE577688.1 L48-2554T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-2554 5', mRNA sequence.    44  3e-05  2
BG446865|BG446865.1 GA__Eb0039J19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039J19f, mRNA sequence.    60  3e-05  2
BG045922|BG045922.1 saa08b01.y1 Gm-c1058 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1058-458 5', mRNA sequence.    60  3e-05  1
BM301456|BM301456.1 MCR046B06_25954 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR046B06 5, mRNA sequence.    44  3e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QQ2) RecName: Full=Uncharacterized protein DDB_G0283697;           62   1e-08
CP001328_438(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    32   9.2

 psg: 0.29  gvh: -0.10  alm: 0.86  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.04
 nuc: 1.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLK643 is nuc

>SLK643F.Seq
GTTTATAACGGATCTCTATGCAAATAAAAAAAAATAAAAAAAAAGGTAAAAGAAAATCAT
CAAAGAAATCAAAAAAAGAAAAAGAGGAAAATGTAGAAGAGGAAGAACAAGATCAAGAAG
AGGAAGAAGAGGGAAATAAAAAACAAAAAGAAGAAAATGATGCAGATAAAAAAAGTAGAA
AACATGATGAACATCGTAAAAAACGTGATAGTAAAAATCGTCGTTCACATAGTAAAAGTG
ATGAAAATGAAGAGGGTGAAGAAGATGATGAAGAAAGAAGAAAGAAAAGAAGACGTAGAA
AACATAGAGAAAAAAGAAAAAAGAATGGAAATAAAGAGGAGGAGGAAGAAGAAGAACAAG
ATGATGAACATGAAGATCAAAATGTTGAAGAAGATGAAGAAGATGTAAATGTAGAAAAAC
AAAAACAACAACAACAACAAAGTGATTTTGATGAAGAAGAAAAAGAAGAAGAGAAAGAAG
AGGAGGAGGAAGAGGAGCAAATAGAAATTAAAAAAAGATCAAAAAAGAGAAATAGTATAG
ATTCAGGTAGAAAAGATAAATCTAAAA----------