>SLK619 (SLK619Q) /CSM/SL/SLK6-A/SLK619Q.Seq.d/
CCCCACGCGTCCGGGATTGCCCACTAGAAAACCNCCCTTTGCCCAACTGGTATTGGGATT
GCCAATTTATTGGGTGGTTATTGGTGTCCCAGAATTCAATTTNGCCAGATGGCACATCGC
CAAAGAGGAGAATCCAACATACCCAAAAGATACCATCACACAACTCCTGCAAATTTATTG
TACTCGTTGAGAGAGGCATTGGTTTTATTGGTGGAGGAGGGTCTTGACAATGTATGGAAA
CGTCATCAAGACGCTGCCATATTGTTGTATGCCGGTTTGGAAAGCTTAGGTTTGAAACCA
TTTGTTCCACAATTAAATGAAGCACCAGAAAAAGGTGGTCGTCTTTTCAGTTTAACCACT
GTTAACATCCCAGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAATTTC
AATATTGAAATTGCTGGTGGTATTGGTGCTTTTGCTGGAAAAGTTTGGCGTATTGGTTTG
ATGGGTCAAAATGCTAATCCAGGTAATATTAAATTATTAATTAGTTCATTATCTGATGCA
CTCAAAGTTAATGGTTTTAATTGTT

phasgiah*KTXLCPTGIGIANLLGGYWCPRIQFXQMAHRQRGESNIPKRYHHTTPANLL
YSLREALVLLVEEGLDNVWKRHQDAAILLYAGLESLGLKPFVPQLNEAPEKGGRLFSLTT
VNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFAGKVWRIGLMGQNANPGNIKLLISSLSDA
LKVNGFNC

Frame A:
phasgiah*KTXLCPTGIGIANLLGGYWCPRIQFXQMAHRQRGESNIPKRYHHTTPANLL
YSLREALVLLVEEGLDNVWKRHQDAAILLYAGLESLGLKPFVPQLNEAPEKGGRLFSLTT
VNIPDGVDGKMVMKYLLDNFNIEIAGGIGAFAGKVWRIGLMGQNANPGNIKLLISSLSDA
LKVNGFNC


Frame B:
ptrpglptrkppfaqlvlglpiywvvigvpefnxarwhiakeenptypkdtitqllqiyc
tr*erhwfywwrrvltmygnviktlpyccmpvwka*v*nhlfhn*mkhqkkvvvfsv*pl
ltsqmvsmvkws*nifwiisilkllvvlvlllekfgvlv*wvkmliqvilny*lvhylmh
sklmvliv


Frame C:
prvrdcplenxplpnwywdcqfigwllvsqnsixpdgtspkrriqhtqkipshnsckfiv
lvergigfiggggs*qcmetssrrchivvcrfgklrfeticstik*strkrwssfqfnhc
*hprwcrw*ngheisfg*fqy*ncwwywcfcwkslaywfdgskc*sr*y*iin*fii*ct
qs*wf*l

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK619 (SLK619Q) /CSM/SL/SLK6-A/SLK619Q.Seq.d/                       1108   0.0
SSJ705 (SSJ705Q) /CSM/SS/SSJ7-A/SSJ705Q.Seq.d/                        938   0.0
SSH113 (SSH113Q) /CSM/SS/SSH1-A/SSH113Q.Seq.d/                        932   0.0
SSK266 (SSK266Q) /CSM/SS/SSK2-C/SSK266Q.Seq.d/                        930   0.0
SSG734 (SSG734Q) /CSM/SS/SSG7-B/SSG734Q.Seq.d/                        930   0.0
SSC860 (SSC860Q) /CSM/SS/SSC8-C/SSC860Q.Seq.d/                        930   0.0
SSJ704 (SSJ704Q) /CSM/SS/SSJ7-A/SSJ704Q.Seq.d/                        916   0.0
SLC625 (SLC625Q) /CSM/SL/SLC6-B/SLC625Q.Seq.d/                        916   0.0
SLI196 (SLI196Q) /CSM/SL/SLI1-D/SLI196Q.Seq.d/                        860   0.0
SSB364 (SSB364Q) /CSM/SS/SSB3-C/SSB364Q.Seq.d/                        846   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC135413|AC135413.10 Medicago truncatula clone mth2-16n19, WORKING DRAFT SEQUENCE, 9 unordered pieces.    44  0.23  3
BP128371|BP128371.1 Nicotiana tabacum cDNA, clone: BY141, primer: M13 forward, sequence 1.    34  1.1  2
BP128372|BP128372.1 Nicotiana tabacum cDNA, clone: BY141, primer: M13 forward, sequence 2.    34  1.1  2
AC134002|AC134002.2 Rattus norvegicus clone CH230-328L8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  1.2  2
AC094913|AC094913.5 Rattus norvegicus clone CH230-6C20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.8  1
AC125377|AC125377.2 Mus musculus chromosome UNK clone RP23-27C10, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  1.8  1
AC115703|AC115703.2 Mus musculus clone RP23-23C9, WORKING DRAFT SEQUENCE, 24 ordered pieces.    44  1.8  1
AC019768|AC019768.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34  3.2  3
BQ591634|BQ591634.1 E012616-024-017-M07-SP6 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-017-M07 5-PRIME, mRNA sequence.    36  3.6  2
AG219930|AG219930.1 Lotus japonicus DNA, clone:LjB02i22_r.        32  4.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GT6) RecName: Full=Serine--pyruvate aminotransferase;       ...   282   4e-75
CP000806_2867(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...   131   1e-29
CP001287_3638(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...   127   2e-28
AP008231_1934(AP008231|pid:none) Synechococcus elongatus PCC 630...   119   4e-26
CP000951_173(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...   119   4e-26
CP000100_2158(CP000100|pid:none) Synechococcus elongatus PCC 794...   119   4e-26
CP000110_1180(CP000110|pid:none) Synechococcus sp. CC9605, compl...   114   1e-24
CP000435_1532(CP000435|pid:none) Synechococcus sp. CC9311, compl...   113   3e-24
CP000447_425(CP000447|pid:none) Shewanella frigidimarina NCIMB 4...   111   1e-23
CP000117_5029(CP000117|pid:none) Anabaena variabilis ATCC 29413,...   111   1e-23

 psg: 0.90  gvh: 0.37  alm: 0.40  top: 0.57  tms: 0.00  mit: 0.30  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for SLK619 is cyt

>SLK619E.Seq
CCCCACGCGTCCGGGATTGCCCACTAGAAAACCNCCCTTTGCCCAACTGGTATTGGGATT
GCCAATTTATTGGGTGGTTATTGGTGTCCCAGAATTCAATTTNGCCAGATGGCACATCGC
CAAAGAGGAGAATCCAACATACCCAAAAGATACCATCACACAACTCCTGCAAATTTATTG
TACTCGTTGAGAGAGGCATTGGTTTTATTGGTGGAGGAGGGTCTTGACAATGTATGGAAA
CGTCATCAAGACGCTGCCATATTGTTGTATGCCGGTTTGGAAAGCTTAGGTTTGAAACCA
TTTGTTCCACAATTAAATGAAGCACCAGAAAAAGGTGGTCGTCTTTTCAGTTTAACCACT
GTTAACATCCCAGATGGTGTCGATGGTAAAATGGTCATGAAATATCTTTTGGATAATTTC
AATATTGAAATTGCTGGTGGTATTGGTGCTTTTGCTGGAAAAGTTTGGCGTATTGGTTTG
ATGGGTCAAAATGCTAATCCAGGTAATATTAAATTATTAATTAGTTCATTATCTGATGCA
CTCAAAGTTAATGGTTTTAATTGTT