>SLK303 (SLK303Q) /CSM/SL/SLK3-A/SLK303Q.Seq.d/
XXXXXXXXXXGTCAAATTCTACTGGATTTTGGAGATCACCTTCAAATTTCTTTTCAAATT
TATTAGGTAGAACTAATGATGTTAATGATGAAAATAATAATAATAATAACAATAATAATG
AAAATCAAGATAATGTTGATAACGATGAAAATGATGACGATGATTTTGCATCATTAGATA
CCAAACCTTTCTCTGTTCCTGTAGAATTACCTCCAAATTTATCTGCTGCCAGACCATAAA
TTATTAACTTTTTTAAACTGTTTTTTTAAAATAAAAATAAATTATTTTTTTAAAT

---SNSTGFWRSPSNFFSNLLGRTNDVNDENNNNNNNNNENQDNVDNDENDDDDFASLDT
KPFSVPVELPPNLSAARP*iinffklff*nknklff*

Frame A:
---SNSTGFWRSPSNFFSNLLGRTNDVNDENNNNNNNNNENQDNVDNDENDDDDFASLDT
KPFSVPVELPPNLSAARP*iinffklff*nknklff*


Frame B:
---qilldfgdhlqisfqiy*velmmlmmkiiiiitiimkikimlitmkmmtmilhh*ip
nlslfl*nylqiyllpdhklltflncffkikinyffk


Frame C:
---kfywileitfkflfkfir*n**c***k*****q***ksr*c**r*k**r*fciiryq
tflcscritskficcqtiny*lf*tvflk*k*iifln

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ756 (SSJ756Q) /CSM/SS/SSJ7-C/SSJ756Q.Seq.d/                        256   2e-67
SSH502 (SSH502Q) /CSM/SS/SSH5-A/SSH502Q.Seq.d/                        256   2e-67
SSC454 (SSC454Q) /CSM/SS/SSC4-C/SSC454Q.Seq.d/                        256   2e-67
SLK303 (SLK303Q) /CSM/SL/SLK3-A/SLK303Q.Seq.d/                        256   2e-67
SLA372 (SLA372Q) /CSM/SL/SLA3-C/SLA372Q.Seq.d/                        256   2e-67
CFJ227 (CFJ227Q) /CSM/CF/CFJ2-B/CFJ227Q.Seq.d/                        256   2e-67
CFA822 (CFA822Q) /CSM/CF/CFA8-A/CFA822Q.Seq.d/                        163   2e-39
AFK757 (AFK757Q) /CSM/AF/AFK7-C/AFK757Q.Seq.d/                        163   2e-39
AFJ792 (AFJ792Q) /CSM/AF/AFJ7-D/AFJ792Q.Seq.d/                        155   4e-37
SSL185 (SSL185Q) /CSM/SS/SSL1-D/SSL185Q.Seq.d/                        145   4e-34

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH157692|BH157692.1 ENTRS29TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.033  2
AC123512|AC123512.4 Homo sapiens 12 BAC RP11-24B21 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48  0.058  1
AC016082|AC016082.2 Homo sapiens clone RP11-24B21, LOW-PASS SEQUENCE SAMPLING.    48  0.058  1
AZ178021|AZ178021.1 SP_0149_A1_B10_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=149 Col=19 Row=C, genomic survey sequence.    34  0.25  2
AZ166374|AZ166374.1 SP_0088_A1_D06_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=88 Col=11 Row=G, genomic survey sequence.    34  0.28  2
AZ166348|AZ166348.1 SP_0088_A1_C04_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=88 Col=7 Row=E, genomic survey sequence.    34  0.28  2
BH205053|BH205053.1 Sm1-52B11.TR Sm1 Schistosoma mansoni genomic clone Sm1-52B11, DNA sequence.    32  0.81  3
BU804389|BU804389.1 SJFBKF09 SJF Schistosoma japonicum cDNA, mRNA sequence.    44  0.91  1
AZ170016|AZ170016.1 SP_0115_A1_F10_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=115 Col=19 Row=K, genomic survey sequence.    32  1.0  2
AZ177482|AZ177482.1 SP_0147_A1_F04_T7A Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=147 Col=7 Row=K, genomic survey sequence.    32  1.0  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 290,050,664

 psg: 0.81  gvh: 0.39  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLK303 is mit

>SLK303Z.Seq
----------GTCAAATTCTACTGGATTTTGGAGATCACCTTCAAATTTCTTTTCAAATT
TATTAGGTAGAACTAATGATGTTAATGATGAAAATAATAATAATAATAACAATAATAATG
AAAATCAAGATAATGTTGATAACGATGAAAATGATGACGATGATTTTGCATCATTAGATA
CCAAACCTTTCTCTGTTCCTGTAGAATTACCTCCAAATTTATCTGCTGCCAGACCATAAA
TTATTAACTTTTTTAAACTGTTTTTTTAAAATAAAAATAAATTATTTTTTTAAAT