SLK302
Library SL
(Link to library)
Clone ID SLK302
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1
Original site URL
Representative seq. ID SLK302P
(Link to Original site)
Representative DNA sequence
>SLK302 (SLK302Q) /CSM/SL/SLK3-A/SLK302Q.Seq.d/
CATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAA
CTACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAA
CCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAAT
AATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAAT
TTTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAAAAAAA
AAAAAAAAAXXXXXXXXXXTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACA
ATAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCT
ATAATTTTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAA
sequence update 1999. 3. 8
Translated Amino Acid sequence
hlhhlhlhhlqqlqlqlqlqlqlqlqlqlqpqpqlqpqlqpqlplkfnqktffikyhynn
nfnnnsikk*y*kspfflynf*IKYKINKKKKKISKKKKKKKK---

---NLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSIIFKLNIK*ikkkkkspkkk


Translated Amino Acid sequence (All Frames)
Frame A:
hlhhlhlhhlqqlqlqlqlqlqlqlqlqlqpqpqlqpqlqpqlplkfnqktffikyhynn
nfnnnsikk*y*kspfflynf*IKYKINKKKKKISKKKKKKKK---

---*i*sknifyqvslq**f****yqkmilkipffsl*fln*i*nk*kkkknlqkk

Frame B:
iciificiicsnyscnyncnyscnyncnynrnhsynhsynhsyllnlikkhflssittii
iliiivskndiknplffsiifklnik*ikkkkkspkkkkkkk---

---kfnqktffikyhynnnfnnnsikk*y*kspfflynf*ikykinkkkkkiskkk

Frame C:
sassssassaattaattiattaatttatttattatttatttats*i*sknifyqvslq**
f****yqkmilkipffsl*fln*i*nk*kkkknlqkkkkkkk---

---NLIKKHFLSSITTIIILIIIVSKNDIKNPLFFSIIFKLNIK*ikkkkkspkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSB820 (SSB820Q) /CSM/SS/SSB8-A/SSB820Q.Seq.d/ 291 5e-78
SLK894 (SLK894Q) /CSM/SL/SLK8-D/SLK894Q.Seq.d/ 291 5e-78
SLK302 (SLK302Q) /CSM/SL/SLK3-A/SLK302Q.Seq.d/ 291 5e-78
SLK165 (SLK165Q) /CSM/SL/SLK1-C/SLK165Q.Seq.d/ 291 5e-78
SLJ763 (SLJ763Q) /CSM/SL/SLJ7-C/SLJ763Q.Seq.d/ 291 5e-78
SLJ739 (SLJ739Q) /CSM/SL/SLJ7-B/SLJ739Q.Seq.d/ 291 5e-78
SLJ571 (SLJ571Q) /CSM/SL/SLJ5-C/SLJ571Q.Seq.d/ 291 5e-78
SLI565 (SLI565Q) /CSM/SL/SLI5-C/SLI565Q.Seq.d/ 291 5e-78
SLI557 (SLI557Q) /CSM/SL/SLI5-C/SLI557Q.Seq.d/ 291 5e-78
SLI431 (SLI431Q) /CSM/SL/SLI4-B/SLI431Q.Seq.d/ 291 5e-78

own update 2003. 6.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 254 9e-86 5
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 238 2e-76 4
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 50 8e-08 6
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 48 2e-07 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 40 3e-06 6
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence. 44 4e-06 5
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 9e-06 8
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 42 9e-06 6
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence. 38 1e-05 8
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 42 1e-05 7
dna update 2003. 7.16
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 190,156,839
protein update 2009. 6. 7
PSORT

psg: 0.25 gvh: 0.33 alm: 0.24 top: -0.03 tms: 0.07 mit: 0.39 mip: 0.00
nuc: 0.59 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.19 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for SLK302 is mit

5' end seq. ID SLK302F
5' end seq.
>SLK302F.Seq
CATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAA
CTACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAA
CCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAAT
AATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAAT
TTTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAAAAAAA
AAAAAAAAA----------
Length of 5' end seq. 309
3' end seq. ID SLK302Z
3' end seq.
>SLK302Z.Seq
----------TAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAATAATT
TTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAATTTTT
AAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAA
Length of 3' end seq. 161
Connected seq. ID SLK302P
Connected seq.
>SLK302P.Seq
CATCTGCATCATCTTCATCTGCATCATCTGCAGCAACTACAGCTGCAACTACAATTGCAA
CTACAGCTGCAACTACAACTGCAACTACAACCGCAACCACAGCTACAACCACAGCTACAA
CCACAGCTACCTCTTAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACAATAAT
AATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCTATAAT
TTTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAAAAAAA
AAAAAAAAA----------TAAATTTAATCAAAAAACATTTTTTATCAAGTATCACTACA
ATAATAATTTTAATAATAATAGTATCAAAAAATGATATTAAAAATCCCCTTTTTTTCTCT
ATAATTTTTAAATTAAATATAAAATAAATAAAAAAAAAAAAAAAATCTCCAAAAAAAAAA
Length of connected seq. 470
Full length Seq ID -
Full length Seq. -
Length of full length seq. -