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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK230
Library SL
(Link to library)
Clone ID SLK230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16245-1
Original site URL
Representative seq. ID SLK230F
(Link to Original site)
Representative DNA sequence 
>SLK230 (SLK230Q) /CSM/SL/SLK2-B/SLK230Q.Seq.d/
GAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATGTAATTCCAAAGATGTTATCTC
AACTCAAAATGGNTATCCGTGCAATGTACTCCTCCCCACCAACCCATGGTGCTCGTCTCG
TCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTTGGGTCAAAGAACTTAAAGAAA
TGTCTGGTANAATCAAAGATGTTCXXXXXXXXXX
sequence update 1999. 3. 8
Translated Amino Acid sequence 
TGALTIVSHREDVIPKMLSQLKMXIRAMYSSPPTHGARLVTTVLSDPELTALWVKELKEM
SGXIKDV---
Translated Amino Acid sequence (All Frames) 
Frame A:
elvpsplflivkm*fqrcylnskwxsvqctpphqpmvlvssppfsltqn*lhfgsknlkk
clvxskm---


Frame B:
nwcphhcfss*rcnskdvistqngypcnvllptnpwcssrhhrsl*princtlgqrt*rn
vwxnqrc---


Frame C:
TGALTIVSHREDVIPKMLSQLKMXIRAMYSSPPTHGARLVTTVLSDPELTALWVKELKEM
SGXIKDV---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN155 (VFN155Q) /CSM/VF/VFN1-C/VFN155Q.Seq.d/                        392   e-109
VFM818 (VFM818Q) /CSM/VF/VFM8-A/VFM818Q.Seq.d/                        392   e-109
VFM287 (VFM287Q) /CSM/VF/VFM2-D/VFM287Q.Seq.d/                        392   e-109
VFM209 (VFM209Q) /CSM/VF/VFM2-A/VFM209Q.Seq.d/                        392   e-109
VFM103 (VFM103Q) /CSM/VF/VFM1-A/VFM103Q.Seq.d/                        392   e-109
VFL854 (VFL854Q) /CSM/VF/VFL8-C/VFL854Q.Seq.d/                        392   e-109
VFL690 (VFL690Q) /CSM/VF/VFL6-D/VFL690Q.Seq.d/                        392   e-109
VFK586 (VFK586Q) /CSM/VF/VFK5-D/VFK586Q.Seq.d/                        392   e-109
VFJ766 (VFJ766Q) /CSM/VF/VFJ7-C/VFJ766Q.Seq.d/                        392   e-109
VFJ761 (VFJ761Q) /CSM/VF/VFJ7-C/VFJ761Q.Seq.d/                        392   e-109
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AG242116|AG242116.1 Lotus japonicus DNA, clone:LjT10b20_not.      44  0.64  1
AG226030|AG226030.1 Lotus japonicus DNA, clone:LjB13f19_r.        44  0.64  1
AC107367|AC107367.7 Mus musculus clone RP23-331D18, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  2.2  3
AL928730|AL928730.7 Mouse DNA sequence from clone RP23-186A19 on chromosome X.    42  2.5  1
AJ293315|AJ293315.1 Rickettsia montanensis recG gene (partial), scoA gene, scoB gene,  forfB1 gene, ORFB2, ORFB3, ORFB4, mraY gene, murF gene, murE gene,  mfd gene, rp599 gene, rp600 gene and dnaA gene (partial).    40  3.2  2
AL772315|AL772315.4 Mouse DNA sequence from clone RP23-54A13 on chromosome 4.    38  8.0  2
AC129695|AC129695.5 Rattus norvegicus clone CH230-11B16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  8.7  2
AC132692|AC132692.4 Rattus norvegicus clone CH230-43D3, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38  9.0  2
AC094544|AC094544.7 Rattus norvegicus clone CH230-4I18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  9.7  2
AC011261|AC011261.3 Homo sapiens clone RP11-1O18, WORKING DRAFT SEQUENCE, 26 unordered pieces.    40     10  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SF7) RecName: Full=Aspartate aminotransferase, cytoplasmic; ...   129   4e-29
CP001392_1604(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...    73   4e-12
CP000539_2063(CP000539|pid:none) Acidovorax sp. JS42, complete g...    73   4e-12
CP001157_1947(CP001157|pid:none) Azotobacter vinelandii DJ, comp...    72   5e-12
(P72173) RecName: Full=Aspartate aminotransferase;          Shor...    72   6e-12
CP000744_1973(CP000744|pid:none) Pseudomonas aeruginosa PA7, com...    72   6e-12
AF147795_13(AF147795|pid:none) Pseudomonas aeruginosa integratio...    72   6e-12
AE014299_2297(AE014299|pid:none) Shewanella oneidensis MR-1, com...    70   2e-11
AF498406_6(AF498406|pid:none) Pseudomonas aeruginosa serotype O1...    70   2e-11
CP000438_1879(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA...    69   5e-11
protein update 2009. 6. 7
PSORT 

 psg: 0.70  gvh: 0.49  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLK230 is cyt
5' end seq. ID SLK230F
5' end seq. 
>SLK230F.Seq
GAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATGTAATTCCAAAGATGTTATCTC
AACTCAAAATGGNTATCCGTGCAATGTACTCCTCCCCACCAACCCATGGTGCTCGTCTCG
TCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTTGGGTCAAAGAACTTAAAGAAA
TGTCTGGTANAATCAAAGATGTTC----------
Length of 5' end seq. 204
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -