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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK195
Library SL
(Link to library)
Clone ID SLK195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLK195P
(Link to Original site)
Representative DNA sequence 
>SLK195 (SLK195Q) /CSM/SL/SLK1-D/SLK195Q.Seq.d/
GCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGCGGTGGTGCTACTGGAGGT
AATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGT
GCTACTGGAGGAAATAGCGGCGGTGCTTCATXXXXXXXXXXCAACCTCTTCAGCTGAAGA
ACCAGCTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGG
TATCTTTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATA
TATATATGAAAATAAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACA
AATCTAAAATTTTAAA
sequence update 1999. 3. 8
Translated Amino Acid sequence 
ATGGNSGGATGGNSGGATGGNSGGATGGNSGGATGGNSGGATGGNSGGAS---

---TSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMIIYLVI*nn*yslyiyenkiiiikk
iikikk*iqi*nfk
Translated Amino Acid sequence (All Frames) 
Frame A:
ATGGNSGGATGGNSGGATGGNSGGATGGNSGGATGGNSGGATGGNSGGAS---

---qplqlknqllvakiqvqspnivfnhlvslfyq**yi**fkitnilyiymkik****k
kl*k*knkykskil

Frame B:
lqeviavvlleaiavvlleviavvlleaivevlqvvtvevlleeiaavlh---

---nlfs*rtscwwrrfkcnlqi*ysiiwylcfindnifsnlk*liffiyi*k*nnnnkk
nyknkkintnlkf*

Frame C:
yrr**rwcywrq*rwcywr**rwcywrq*wrcyrw*qwrcywrk*rrcf---

---TSSAEEPAAGGEDSSAISKYSIQSFGIFVLSMIIYLVI*nn*yslyiyenkiiiikk
iikikk*iqi*nfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK195 (SLK195Q) /CSM/SL/SLK1-D/SLK195Q.Seq.d/                        450   e-126
SLJ818 (SLJ818Q) /CSM/SL/SLJ8-A/SLJ818Q.Seq.d/                        299   2e-80
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/                        299   2e-80
SLA520 (SLA520Q) /CSM/SL/SLA5-A/SLA520Q.Seq.d/                        268   6e-71
SLK338 (SLK338Q) /CSM/SL/SLK3-B/SLK338Q.Seq.d/                        218   5e-56
SLG686 (SLG686Q) /CSM/SL/SLG6-D/SLG686Q.Seq.d/                        196   2e-49
SLE356 (SLE356Q) /CSM/SL/SLE3-C/SLE356Q.Seq.d/                        196   2e-49
SSG715 (SSG715Q) /CSM/SS/SSG7-A/SSG715Q.Seq.d/                        190   1e-47
SLK846 (SLK846Q) /CSM/SL/SLK8-B/SLK846Q.Seq.d/                        190   1e-47
SLK788 (SLK788Q) /CSM/SL/SLK7-D/SLK788Q.Seq.d/                        190   1e-47
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF312775|AF312775.1 Tetrahymena thermophila macronuclear immobilization antigen LD (SerLD) mRNA, complete cds.    30  0.003  4
AF312772|AF312772.1 Tetrahymena thermophila macronuclear immobilization antigen LC (SerLC) mRNA, partial cds.    30  0.044  3
AF312771|AF312771.1 Tetrahymena thermophila macronuclear immobilization antigen LB (SerLB) mRNA, complete cds.    30  0.060  3
AF312770|AF312770.1 Tetrahymena thermophila macronuclear immobilization antigen LA (SerLA) mRNA, complete cds.    30  0.062  3
AC116673|AC116673.2 Mus musculus clone RP24-408O23, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  0.30  1
AC134191|AC134191.2 Rattus norvegicus clone CH230-251B8, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.2  1
AC112016|AC112016.4 Rattus norvegicus clone CH230-13D17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44  1.2  1
BZ214372|BZ214372.1 CH230-249J2.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-249J2, DNA sequence.    44  1.2  1
CC566510|CC566510.1 CH240_440I20.T7 CHORI-240 Bos taurus genomic clone CH240_440I20, genomic survey sequence.    44  1.2  1
AF312774|AF312774.1 Tetrahymena thermophila macronuclear immobilization antigen (SerLpseudo pseudogene) mRNA, complete sequence.    28  2.1  3
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GV8) RecName: Full=Uncharacterized transmembrane protein DDB...    74   2e-12
protein update 2009. 1.25
PSORT 

 psg: 0.78  gvh: 0.35  alm: 0.24  top: 0.73  tms: 0.07  mit: -0.03  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SLK195 is cyt
5' end seq. ID SLK195F
5' end seq. 
>SLK195F.Seq
GCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGCGGTGGTGCTACTGGAGGT
AATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGT
GCTACTGGAGGAAATAGCGGCGGTGCTTCAT----------
Length of 5' end seq. 151
3' end seq. ID SLK195Z
3' end seq. 
>SLK195Z.Seq
----------CAACCTCTTCAGCTGAAGAACCAGCTGCTGGTGGCGAAGATTCAAGTGCA
ATCTCCAAATATAGTATTCAATCATTTGGTATCTTTGTTTTATCAATGATAATATATTTA
GTAATTTAAAATAACTAATATTCTTTATATATATATGAAAATAAAATAATAATAATAAAA
AAAATTATAAAAATAAAAAAATAAATACAAATCTAAAATTTTAAA
Length of 3' end seq. 215
Connected seq. ID SLK195P
Connected seq. 
>SLK195P.Seq
GCTACAGGAGGTAATAGCGGTGGTGCTACTGGAGGCAATAGCGGTGGTGCTACTGGAGGT
AATAGCGGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGT
GCTACTGGAGGAAATAGCGGCGGTGCTTCAT----------CAACCTCTTCAGCTGAAGA
ACCAGCTGCTGGTGGCGAAGATTCAAGTGCAATCTCCAAATATAGTATTCAATCATTTGG
TATCTTTGTTTTATCAATGATAATATATTTAGTAATTTAAAATAACTAATATTCTTTATA
TATATATGAAAATAAAATAATAATAATAAAAAAAATTATAAAAATAAAAAAATAAATACA
AATCTAAAATTTTAAA
Length of connected seq. 366
Full length Seq ID -
Full length Seq. -
Length of full length seq. -