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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK190
Library SL
(Link to library)
Clone ID SLK190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11615-1
Original site URL
Representative seq. ID SLK190P
(Link to Original site)
Representative DNA sequence 
>SLK190 (SLK190Q) /CSM/SL/SLK1-D/SLK190Q.Seq.d/
ATAAAACTCAATATTTCAATTTAAAAAAAAAAAAAAAAAATGGATACAATAGTTTCACCC
TCAACAACTAATCCACCAACAACAACAGAGTCAACAATAAATAGTATAATAACAACAACA
GATTCTAATAGTAATAACACAAATGATAACACTACAACTAATACCACTACTACAACTACA
ACAACAACAACAACTAATATTATAAATGACTCTGATTTAAAAACAAAAACAACCACAACA
ACAACAACAATAATAAATGAAGAAAATTCAAAAATTACAATAAAAACCAAATGGAATGGT
AAAGAATATAAAGXXXXXXXXXXAGTATGAAAAATACTTTACATGTTGATGATCTCTCCA
AAAACTTTGCAATGAATCCAAAGAATGGTGTACATGTTCCACCTTTTAAAATTAAAGATG
CTAAAAAGTATGGTGATAATGTCTTATTCCATCTAACAAAATATTTAAAATCAATTTCAA
ATGAAGAAGATATAACTCTTATTGATCATAAGGAATGGATTAGAAAAATTTTATA
sequence update 1999. 3. 8
Translated Amino Acid sequence 
iklnisi*KKKKKMDTIVSPSTTNPPTTTESTINSIITTTDSNSNNTNDNTTTNTTTTTT
TTTTTNIINDSDLKTKTTTTTTTIINEENSKITIKTKWNGKEYK---

---SMKNTLHVDDLSKNFAMNPKNGVHVPPFKIKDAKKYGDNVLFHLTKYLKSISNEEDI
TLIDHKEWIRKIL
Translated Amino Acid sequence (All Frames) 
Frame A:
iklnisi*KKKKKMDTIVSPSTTNPPTTTESTINSIITTTDSNSNNTNDNTTTNTTTTTT
TTTTTNIINDSDLKTKTTTTTTTIINEENSKITIKTKWNGKEYK---

---SMKNTLHVDDLSKNFAMNPKNGVHVPPFKIKDAKKYGDNVLFHLTKYLKSISNEEDI
TLIDHKEWIRKIL

Frame B:
*nsifqfkkkkkkwiq*fhpqqlihqqqqsqq*iv**qqqilivitqmitlqlipllqlq
qqqqlil*mtli*kqkqpqqqqq**mkkiqklq*kpngmvknik---

---v*kilymlmispktlq*iqrmvymfhllklkmlksmvimsysi*qni*nqfqmkki*
llliirnglekfy

Frame C:
ktqyfnlkkkkkngynsftlnn*stnnnrvnnk*ynnnnrf****hk**hyn*yhyynyn
nnnn*yyk*l*fknknnhnnnnnnk*rkfknynknqmew*ri*---

---yekyftc**slqklcneskewctcstf*n*rc*kvw**clipsnkifkinfk*rryn
sy*s*gmd*knfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK190 (SLK190Q) /CSM/SL/SLK1-D/SLK190Q.Seq.d/                        432   e-120
SSM888 (SSM888Q) /CSM/SS/SSM8-D/SSM888Q.Seq.d/                        420   e-117
SSK715 (SSK715Q) /CSM/SS/SSK7-A/SSK715Q.Seq.d/                        420   e-117
SSD374 (SSD374Q) /CSM/SS/SSD3-D/SSD374Q.Seq.d/                        420   e-117
CFA370 (CFA370Q) /CSM/CF/CFA3-C/CFA370Q.Seq.d/                        317   1e-85
CHK657 (CHK657Q) /CSM/CH/CHK6-C/CHK657Q.Seq.d/                        305   4e-82
FC-IC1323 (FC-IC1323Q) /CSM/FC-IC/FC-IC1323Q.Seq.d/                   285   3e-76
CFF607 (CFF607Q) /CSM/CF/CFF6-A/CFF607Q.Seq.d/                        208   6e-53
CFJ128 (CFJ128Q) /CSM/CF/CFJ1-B/CFJ128Q.Seq.d/                        186   2e-46
SFH658 (SFH658Q) /CSM/SF/SFH6-C/SFH658Q.Seq.d/                        180   1e-44
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   420  e-171  9
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34  0.002  9
AZ530782|AZ530782.1 ENTDJ03TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.11  2
BH146618|BH146618.1 ENTPN29TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.11  2
BH167238|BH167238.1 ENTRC68TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.11  2
BH160770|BH160770.1 ENTSJ19TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.11  2
AZ541914|AZ541914.1 ENTFO86TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.11  2
AZ685147|AZ685147.1 ENTJL81TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44  0.12  2
AC007301|AC007301.8 Drosophila melanogaster, chromosome 2R, region 43E12-44F1, BAC clone BACR04B09, complete sequence.    46  0.26  2
AC020003|AC020003.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    46  0.43  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_106(AC116984|pid:none) Dictyostelium discoideum chromos...   147   1e-34
EU961853_1(EU961853|pid:none) Zea mays clone 238650 ubiquitin-li...    63   5e-09
(Q2KJD7) RecName: Full=Ubiquitin-like domain-containing CTD phos...    60   3e-08
(Q8BGR9) RecName: Full=Ubiquitin-like domain-containing CTD phos...    60   3e-08
BC002236_1(BC002236|pid:none) Mus musculus ubiquitin-like domain...    60   3e-08
AY893165_1(AY893165|pid:none) Synthetic construct Homo sapiens c...    60   3e-08
AC183497_2(AC183497|pid:none) Brassica oleracea, *** SEQUENCING ...    60   4e-08
(Q28EX9) RecName: Full=Ubiquitin-like domain-containing CTD phos...    59   7e-08
CR954201_293(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    58   2e-07
(Q8W3M6) RecName: Full=Ubiquitin-like domain-containing CTD phos...    57   2e-07
protein update 2009. 6. 7
PSORT 

 psg: 0.86  gvh: 0.41  alm: 0.61  top: 0.13  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for SLK190 is nuc
5' end seq. ID SLK190F
5' end seq. 
>SLK190F.Seq
ATAAAACTCAATATTTCAATTTAAAAAAAAAAAAAAAAAATGGATACAATAGTTTCACCC
TCAACAACTAATCCACCAACAACAACAGAGTCAACAATAAATAGTATAATAACAACAACA
GATTCTAATAGTAATAACACAAATGATAACACTACAACTAATACCACTACTACAACTACA
ACAACAACAACAACTAATATTATAAATGACTCTGATTTAAAAACAAAAACAACCACAACA
ACAACAACAATAATAAATGAAGAAAATTCAAAAATTACAATAAAAACCAAATGGAATGGT
AAAGAATATAAAG----------
Length of 5' end seq. 313
3' end seq. ID SLK190Z
3' end seq. 
>SLK190Z.Seq
----------AGTATGAAAAATACTTTACATGTTGATGATCTCTCCAAAAACTTTGCAAT
GAATCCAAAGAATGGTGTACATGTTCCACCTTTTAAAATTAAAGATGCTAAAAAGTATGG
TGATAATGTCTTATTCCATCTAACAAAATATTTAAAATCAATTTCAAATGAAGAAGATAT
AACTCTTATTGATCATAAGGAATGGATTAGAAAAATTTTATA
Length of 3' end seq. 212
Connected seq. ID SLK190P
Connected seq. 
>SLK190P.Seq
ATAAAACTCAATATTTCAATTTAAAAAAAAAAAAAAAAAATGGATACAATAGTTTCACCC
TCAACAACTAATCCACCAACAACAACAGAGTCAACAATAAATAGTATAATAACAACAACA
GATTCTAATAGTAATAACACAAATGATAACACTACAACTAATACCACTACTACAACTACA
ACAACAACAACAACTAATATTATAAATGACTCTGATTTAAAAACAAAAACAACCACAACA
ACAACAACAATAATAAATGAAGAAAATTCAAAAATTACAATAAAAACCAAATGGAATGGT
AAAGAATATAAAG----------AGTATGAAAAATACTTTACATGTTGATGATCTCTCCA
AAAACTTTGCAATGAATCCAAAGAATGGTGTACATGTTCCACCTTTTAAAATTAAAGATG
CTAAAAAGTATGGTGATAATGTCTTATTCCATCTAACAAAATATTTAAAATCAATTTCAA
ATGAAGAAGATATAACTCTTATTGATCATAAGGAATGGATTAGAAAAATTTTATA
Length of connected seq. 525
Full length Seq ID -
Full length Seq. -
Length of full length seq. -