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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLK181
Library SL
(Link to library)
Clone ID SLK181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID SLK181Z
(Link to Original site)
Representative DNA sequence 
>SLK181 (SLK181Q) /CSM/SL/SLK1-D/SLK181Q.Seq.d/
XXXXXXXXXXATGATAATAATCCATGTACCGTAGATGCCTGTACCAAATCAACAGGTGTC
ACTCATACCCCAGTAAATGTAGATGATAATAAAAAATATAAATAATAAAAT
sequence update 1998.10.22
Translated Amino Acid sequence 
---DNNPCTVDACTKSTGVTHTPVNVDDNKKYK**n
Translated Amino Acid sequence (All Frames) 
Frame A:
---***smyrrclyqinrchsypskcr***ki*iik


Frame B:
---DNNPCTVDACTKSTGVTHTPVNVDDNKKYK**n


Frame C:
---iiihvp*mpvpnqqvslipq*m*miikninnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLK182 (SLK182Q) /CSM/SL/SLK1-D/SLK182Q.Seq.d/                        149   9e-36
SLK181 (SLK181Q) /CSM/SL/SLK1-D/SLK181Q.Seq.d/                        149   9e-36
CHK330 (CHK330Q) /CSM/CH/CHK3-B/CHK330Q.Seq.d/                        149   9e-36
CHS280 (CHS280Q) /CSM/CH/CHS2-D/CHS280Q.Seq.d/                        127   3e-29
SHK502 (SHK502Q) /CSM/SH/SHK5-A/SHK502Q.Seq.d/                        125   1e-28
SHK455 (SHK455Q) /CSM/SH/SHK4-C/SHK455Q.Seq.d/                        125   1e-28
SHJ336 (SHJ336Q) /CSM/SH/SHJ3-B/SHJ336Q.Seq.d/                        125   1e-28
SHG549 (SHG549Q) /CSM/SH/SHG5-C/SHG549Q.Seq.d/                        125   1e-28
SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/                        125   1e-28
SHG420 (SHG420Q) /CSM/SH/SHG4-A/SHG420Q.Seq.d/                        125   1e-28
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115570|AC115570.4 Rattus norvegicus clone CH230-36M17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38     19  1
dna update 2003. 7.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...    49   4e-05
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    42   0.007
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    42   0.007
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    36   0.47
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 35   1.1
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...    33   3.1
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    33   4.0
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    32   6.9
protein update 2009. 1.25
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLK181 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLK181Z
3' end seq. 
>SLK181Z.Seq
----------ATGATAATAATCCATGTACCGTAGATGCCTGTACCAAATCAACAGGTGTC
ACTCATACCCCAGTAAATGTAGATGATAATAAAAAATATAAATAATAAAAT
Length of 3' end seq. 101
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -