SLK157
Library SL
(Link to library)
Clone ID SLK157
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16022-1
Original site URL
Representative seq. ID SLK157Z
(Link to Original site)
Representative DNA sequence
>SLK157 (SLK157Q) /CSM/SL/SLK1-C/SLK157Q.Seq.d/
XXXXXXXXXXCCTGATGGTAAATCATTCGTTACCCTTCAATATTACAATAGAATCTTTAA
AGAGGAATCTGATAAATTGGAAAAAGCTCATCCAAATTCTAAAACTTTAACTGATGCCAT
TCAAATCTTTAATAATTTAATTGTCTCTCCAAATTTCATTGACTTTTTAACACCTTCTTG
TTATAAATTTGTTGTCGATTCTGAAAGAAAAACTTTTTCTCCAAAATTATAAAC
sequence update 1998. 9. 8
Translated Amino Acid sequence
---DGKSFVTLQYYNRIFKEESDKLEKAHPNSKTLTDAIQIFNNLIVSPNFIDFLTPSCY
KFVVDSERKTFSPKL*


Translated Amino Acid sequence (All Frames)
Frame A:
---lmvnhslpfnitieslkrnlinwkkliqilkl*lmpfkslii*lslqisltf*hllv
inllsilkeklflqnyk


Frame B:
---*w*iirypsilq*nl*rgi**igkssskf*nfn*chsnl**fnclskfh*lfntfll
*iccrf*kknffskiin


Frame C:
---DGKSFVTLQYYNRIFKEESDKLEKAHPNSKTLTDAIQIFNNLIVSPNFIDFLTPSCY
KFVVDSERKTFSPKL*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLK157 (SLK157Q) /CSM/SL/SLK1-C/SLK157Q.Seq.d/ 444 e-124
FC-AR15 (FC-AR15Q) /CSM/FC/FC-AR/FC-AR15Q.Seq.d/ 442 e-123
FC-292 (FC-292Q) /CSM/CG/CG-FC/FC-292Q.Seq.d/ 442 e-123
SLF442 (SLF442Q) /CSM/SL/SLF4-B/SLF442Q.Seq.d/ 436 e-122
FC-AZ10 (FC-AZ10Q) /CSM/FC/FC-AZ/FC-AZ10Q.Seq.d/ 434 e-121
SFF709 (SFF709Q) /CSM/SF/SFF7-A/SFF709Q.Seq.d/ 396 e-110
VFL317 (VFL317Q) /CSM/VF/VFL3-A/VFL317Q.Seq.d/ 392 e-109
CFF652 (CFF652Q) /CSM/CF/CFF6-C/CFF652Q.Seq.d/ 389 e-107
VFI785 (VFI785Q) /CSM/VF/VFI7-D/VFI785Q.Seq.d/ 379 e-104
VFF367 (VFF367Q) /CSM/VF/VFF3-C/VFF367Q.Seq.d/ 369 e-101

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 442 e-121 1
AC134937|AC134937.2 Rattus norvegicus clone CH230-225D17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.15 6
CB292446|CB292446.1 UCRCS01_04cb05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cb05, mRNA sequence. 46 0.18 1
AF492576|AF492576.1 Carlquistia muirii clone Cm2 GIA/RGA-like gibberellin response modulator (GAI) gene, partial cds. 46 0.18 1
AF492575|AF492575.1 Carlquistia muirii clone Cm1 GIA/RGA-like gibberellin response modulator (GAI) gene, partial cds. 46 0.18 1
AC053528|AC053528.2 Homo sapiens chromosome 11 clone RP11-698N11, WORKING DRAFT SEQUENCE, 13 unordered pieces. 46 0.70 3
AC115570|AC115570.4 Rattus norvegicus clone CH230-36M17, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.71 1
AL391295|AL391295.12 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP11-377F16. 32 1.6 6
AP000244|AP000244.1 Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:B282I5. 36 1.9 5
AC026970|AC026970.7 Homo sapiens chromosome 11, clone RP11-472K20, complete sequence. 46 1.9 2
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T2K9) RecName: Full=Malate synthase; EC=2.3.3.9; &A... 151 6e-36
CP000473_5633(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 1.0
(P08216) RecName: Full=Malate synthase, glyoxysomal; EC... 32 8.8
(P28345) RecName: Full=Malate synthase, glyoxysomal; EC... 32 8.8
M16219_1(M16219|pid:none) Cucumber (C.sativus) glyoxysomal malat... 32 8.8

protein update 2009. 6. 6
PSORT

psg: 0.81 gvh: 0.34 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
24.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLK157 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLK157Z
3' end seq.
>SLK157Z.Seq
----------CCTGATGGTAAATCATTCGTTACCCTTCAATATTACAATAGAATCTTTAA
AGAGGAATCTGATAAATTGGAAAAAGCTCATCCAAATTCTAAAACTTTAACTGATGCCAT
TCAAATCTTTAATAATTTAATTGTCTCTCCAAATTTCATTGACTTTTTAACACCTTCTTG
TTATAAATTTGTTGTCGATTCTGAAAGAAAAACTTTTTCTCCAAAATTATAAAC
Length of 3' end seq. 224
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -