SLK146
Library SL
(Link to library)
Clone ID SLK146
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15575-1
Original site URL
Representative seq. ID SLK146Z
(Link to Original site)
Representative DNA sequence
>SLK146 (SLK146Q) /CSM/SL/SLK1-B/SLK146Q.Seq.d/
XXXXXXXXXXGGGAAAGCTGGTACGCCTGCAGGTACCGGTCCGGAATTCCCGGGTTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTATTA
TTAGTATTATTATTGCTATTATTATTATTCATTGGTTCCCAGAGTGATCCACTACTGGTT
GTTTTCCATAAATCAAATGAATTTGAATTTGAAAAGAATTGTGAATTTGAAATTTCTGTC
ATCTTTTTGAAGTTTTAAAATTTTTTTTTTTTTTTTTTGTGGTGGAAA
sequence update 1998. 9. 8
Translated Amino Acid sequence
---ESWYACRYRSGIPGLLLLLLLLLLLLLLLLLLLLVLLVLLLLLLLFIGSQSDPLLVV
FHKSNEFEFEKNCEFEISVIFLKF*nffffflwwk


Translated Amino Acid sequence (All Frames)
Frame A:
---gklvrlqvpvrnsrviiiiiiiiiiiiiiiiiiisiisiiiaiiiihwfpe*sttgc
fp*ik*i*i*kel*i*nfchlfevlkffffffvve


Frame B:
---ESWYACRYRSGIPGLLLLLLLLLLLLLLLLLLLLVLLVLLLLLLLFIGSQSDPLLVV
FHKSNEFEFEKNCEFEISVIFLKF*nffffflwwk


Frame C:
---kagtpagtgpefpgyyyyyyyyyyyyyyyyyyy*yy*yyycyyyyslvprvihywlf
sinqmnlnlkrivnlkflssf*sfkifffffcgg


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLK146 (SLK146Q) /CSM/SL/SLK1-B/SLK146Q.Seq.d/ 220 9e-57
SSJ848 (SSJ848Q) /CSM/SS/SSJ8-B/SSJ848Q.Seq.d/ 76 3e-13
SLJ565 (SLJ565Q) /CSM/SL/SLJ5-C/SLJ565Q.Seq.d/ 64 1e-09
SLK673 (SLK673Q) /CSM/SL/SLK6-D/SLK673Q.Seq.d/ 60 2e-08
SLE529 (SLE529Q) /CSM/SL/SLE5-B/SLE529Q.Seq.d/ 44 0.001
VSA557 (VSA557Q) /CSM/VS/VSA5-C/VSA557Q.Seq.d/ 36 0.28
VHF848 (VHF848Q) /CSM/VH/VHF8-B/VHF848Q.Seq.d/ 36 0.28
SSD402 (SSD402Q) /CSM/SS/SSD4-A/SSD402Q.Seq.d/ 36 0.28
SSD401 (SSD401Q) /CSM/SS/SSD4-A/SSD401Q.Seq.d/ 36 0.28
SLH464 (SLH464Q) /CSM/SL/SLH4-C/SLH464Q.Seq.d/ 36 0.28

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG926995|BG926995.1 HNC25-1-D2.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 5e-17 2
BG929206|BG929206.1 HNC59-1-F10.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 7e-17 2
BG900021|BG900021.1 HOA48-1-G3.R HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA , mRNA sequence. 88 2e-16 2
BG929379|BG929379.1 HNC49-1-H4.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 3e-16 2
BG899246|BG899246.1 HOA45-1-H9.R HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA , mRNA sequence. 88 8e-16 2
BG924943|BG924943.1 HNC70-1-B2.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 1e-15 2
BG900683|BG900683.1 HOA27-1-A10 HOA (Human Osteoarthritic Cartilage) Homo sapiens cDNA, mRNA sequence. 88 2e-15 2
BG927715|BG927715.1 HNC32-1-C4.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 3e-15 2
BG927033|BG927033.1 HNC16-1-H10.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 3e-15 2
BG926098|BG926098.1 HNC32-1-F4.R HNC (Human Normal Cartilage) Homo sapiens cDNA, mRNA sequence. 88 3e-15 2
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ271468_1(AJ271468|pid:none) Arabidopsis thaliana mRNA for mito... 37 0.21
A81671_1(A81671|pid:none) Sequence 9 from Patent WO9901558. 37 0.21
U12390_1(U12390|pid:none) Cloning vector pSport1, complete cds. 37 0.21
AX301825_1(AX301825|pid:none) Sequence 4 from Patent WO0185768. ... 37 0.21
U84883_1(U84883|pid:none) HIV-1 strain H35 from USA, envelope gl... 33 2.3
U84881_1(U84881|pid:none) HIV-1 strain W32 from USA, envelope gl... 33 2.3

protein update 2009. 1.25
PSORT

psg: 0.99 gvh: 1.06 alm: 0.56 top: 0.30 tms: 0.00 mit: 0.26 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: extracellular, including cell wall
16.0 %: vacuolar
12.0 %: endoplasmic reticulum
4.0 %: cytoplasmic

>> prediction for SLK146 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLK146Z
3' end seq.
>SLK146Z.Seq
----------GGGAAAGCTGGTACGCCTGCAGGTACCGGTCCGGAATTCCCGGGTTATTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAGTATTA
TTAGTATTATTATTGCTATTATTATTATTCATTGGTTCCCAGAGTGATCCACTACTGGTT
GTTTTCCATAAATCAAATGAATTTGAATTTGAAAAGAATTGTGAATTTGAAATTTCTGTC
ATCTTTTTGAAGTTTTAAAATTTTTTTTTTTTTTTTTTGTGGTGGAAA
Length of 3' end seq. 278
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -