SLK131
Library SL
(Link to library)
Clone ID SLK131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID SLK131Z
(Link to Original site)
Representative DNA sequence
>SLK131 (SLK131Q) /CSM/SL/SLK1-B/SLK131Q.Seq.d/
XXXXXXXXXXTTATCACTGACGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTAC
AATACCTACATTGCCGAAATGCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAA
AATGGTTTATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACC
GCCCCCCTCCCTATCCAATACTCACACCACAACAACATATTTCATCCGCTCATTATAAAA
ACAACAAAAACTTCAACTCTTTTACACCTCGTTTAATAAAAAAA
sequence update 1998. 9. 8
Translated Amino Acid sequence
---SLTLKEVKSMNYLVITIPTLPKCHKTLEVSSKRVPKMVYSSVGPHLVRAIGFINRPP
PSLSNTHTTTTYFIRSL*kqqklqlfytsfnkk


Translated Amino Acid sequence (All Frames)
Frame A:
---yh*r*krsnr*iisslqylhcrnatrhwkfplnefqkwfivqlvpiw*gp*gl*idr
pppypiltpqqhissahyknnknfnsftprlikk


Frame B:
---itdaergqidelsrhyntyiaempqdigsfl*tsskngl*fswspfgeghrvyksta
plpiqyshhnnifhpliikttktstllhlv**k


Frame C:
---SLTLKEVKSMNYLVITIPTLPKCHKTLEVSSKRVPKMVYSSVGPHLVRAIGFINRPP
PSLSNTHTTTTYFIRSL*kqqklqlfytsfnkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE235 (VSE235Q) /CSM/VS/VSE2-B/VSE235Q.Seq.d/ 529 e-150
SLK131 (SLK131Q) /CSM/SL/SLK1-B/SLK131Q.Seq.d/ 529 e-150
SLG683 (SLG683Q) /CSM/SL/SLG6-D/SLG683Q.Seq.d/ 529 e-150
SLG244 (SLG244Q) /CSM/SL/SLG2-B/SLG244Q.Seq.d/ 529 e-150
SLG219 (SLG219Q) /CSM/SL/SLG2-A/SLG219Q.Seq.d/ 529 e-150
SLG203 (SLG203Q) /CSM/SL/SLG2-A/SLG203Q.Seq.d/ 529 e-150
SLE749 (SLE749Q) /CSM/SL/SLE7-C/SLE749Q.Seq.d/ 529 e-150
SLE712 (SLE712Q) /CSM/SL/SLE7-A/SLE712Q.Seq.d/ 529 e-150
SLE642 (SLE642Q) /CSM/SL/SLE6-B/SLE642Q.Seq.d/ 529 e-150
SLE378 (SLE378Q) /CSM/SL/SLE3-D/SLE378Q.Seq.d/ 529 e-150

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U78759|U78759.1 Dictyostelium discoideum IfdA (ifdA) mRNA, partial cds. 502 e-138 1
BZ674523|BZ674523.1 PUBDY50TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa033J03, DNA sequence. 44 0.87 1
BZ754105|BZ754105.1 PUDBJ25TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa148F02, DNA sequence. 44 0.87 1
BE053955|BE053955.1 GA__Ea0033K10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0033K10f, mRNA sequence. 34 2.5 2
AC027748|AC027748.2 Homo sapiens chromosome 3 clone RP11-418A22 map 3, WORKING DRAFT SEQUENCE, 28 unordered pieces. 42 3.5 1
AC123550|AC123550.5 Mus musculus chromosome 7 clone RP24-289C13, complete sequence. 42 3.5 1
AC079523|AC079523.1 Mus musculus clone RP23-315C13, WORKING DRAFT SEQUENCE, 22 unordered pieces. 42 3.5 1
AC092990|AC092990.4 Homo sapiens 3 BAC RP11-418A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 3.5 1
AX323851|AX323851.1 Sequence 339 from Patent WO0192565. 42 3.5 1
AX251563|AX251563.1 Sequence 531 from Patent WO0168912. 42 3.5 1
dna update 2003. 7.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m... 67 2e-10
AY814786_1(AY814786|pid:none) Schistosoma japonicum SJCHGC06278 ... 35 0.81
(A5DVM3) RecName: Full=ATP-dependent RNA helicase eIF4A; ... 34 1.4
AJ320155_1(AJ320155|pid:none) Toxoplasma gondii mRNA for eukaryo... 34 1.4
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi... 33 2.3
DQ507350_1(DQ507350|pid:none) Belgica antarctica clone Ba-D27 eu... 33 4.0

protein update 2009. 1.25
PSORT

psg: 0.93 gvh: 0.52 alm: 0.43 top: 0.60 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SLK131 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLK131Z
3' end seq.
>SLK131Z.Seq
----------TTATCACTGACGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTAC
AATACCTACATTGCCGAAATGCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAA
AATGGTTTATAGTTCAGTTGGTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACC
GCCCCCCTCCCTATCCAATACTCACACCACAACAACATATTTCATCCGCTCATTATAAAA
ACAACAAAAACTTCAACTCTTTTACACCTCGTTTAATAAAAAAA
Length of 3' end seq. 274
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -